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GPU-accelerated iterative reconstruction for limited-data tomography in CBCT systems
BACKGROUND: Standard cone-beam computed tomography (CBCT) involves the acquisition of at least 360 projections rotating through 360 degrees. Nevertheless, there are cases in which only a few projections can be taken in a limited angular span, such as during surgery, where rotation of the source-dete...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5952580/ https://www.ncbi.nlm.nih.gov/pubmed/29764362 http://dx.doi.org/10.1186/s12859-018-2169-3 |
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author | de Molina, Claudia Serrano, Estefania Garcia-Blas, Javier Carretero, Jesus Desco, Manuel Abella, Monica |
author_facet | de Molina, Claudia Serrano, Estefania Garcia-Blas, Javier Carretero, Jesus Desco, Manuel Abella, Monica |
author_sort | de Molina, Claudia |
collection | PubMed |
description | BACKGROUND: Standard cone-beam computed tomography (CBCT) involves the acquisition of at least 360 projections rotating through 360 degrees. Nevertheless, there are cases in which only a few projections can be taken in a limited angular span, such as during surgery, where rotation of the source-detector pair is limited to less than 180 degrees. Reconstruction of limited data with the conventional method proposed by Feldkamp, Davis and Kress (FDK) results in severe artifacts. Iterative methods may compensate for the lack of data by including additional prior information, although they imply a high computational burden and memory consumption. RESULTS: We present an accelerated implementation of an iterative method for CBCT following the Split Bregman formulation, which reduces computational time through GPU-accelerated kernels. The implementation enables the reconstruction of large volumes (>1024(3) pixels) using partitioning strategies in forward- and back-projection operations. We evaluated the algorithm on small-animal data for different scenarios with different numbers of projections, angular span, and projection size. Reconstruction time varied linearly with the number of projections and quadratically with projection size but remained almost unchanged with angular span. Forward- and back-projection operations represent 60% of the total computational burden. CONCLUSION: Efficient implementation using parallel processing and large-memory management strategies together with GPU kernels enables the use of advanced reconstruction approaches which are needed in limited-data scenarios. Our GPU implementation showed a significant time reduction (up to 48 ×) compared to a CPU-only implementation, resulting in a total reconstruction time from several hours to few minutes. |
format | Online Article Text |
id | pubmed-5952580 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-59525802018-05-21 GPU-accelerated iterative reconstruction for limited-data tomography in CBCT systems de Molina, Claudia Serrano, Estefania Garcia-Blas, Javier Carretero, Jesus Desco, Manuel Abella, Monica BMC Bioinformatics Software BACKGROUND: Standard cone-beam computed tomography (CBCT) involves the acquisition of at least 360 projections rotating through 360 degrees. Nevertheless, there are cases in which only a few projections can be taken in a limited angular span, such as during surgery, where rotation of the source-detector pair is limited to less than 180 degrees. Reconstruction of limited data with the conventional method proposed by Feldkamp, Davis and Kress (FDK) results in severe artifacts. Iterative methods may compensate for the lack of data by including additional prior information, although they imply a high computational burden and memory consumption. RESULTS: We present an accelerated implementation of an iterative method for CBCT following the Split Bregman formulation, which reduces computational time through GPU-accelerated kernels. The implementation enables the reconstruction of large volumes (>1024(3) pixels) using partitioning strategies in forward- and back-projection operations. We evaluated the algorithm on small-animal data for different scenarios with different numbers of projections, angular span, and projection size. Reconstruction time varied linearly with the number of projections and quadratically with projection size but remained almost unchanged with angular span. Forward- and back-projection operations represent 60% of the total computational burden. CONCLUSION: Efficient implementation using parallel processing and large-memory management strategies together with GPU kernels enables the use of advanced reconstruction approaches which are needed in limited-data scenarios. Our GPU implementation showed a significant time reduction (up to 48 ×) compared to a CPU-only implementation, resulting in a total reconstruction time from several hours to few minutes. BioMed Central 2018-05-15 /pmc/articles/PMC5952580/ /pubmed/29764362 http://dx.doi.org/10.1186/s12859-018-2169-3 Text en © The Author(s) 2018 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License(http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Software de Molina, Claudia Serrano, Estefania Garcia-Blas, Javier Carretero, Jesus Desco, Manuel Abella, Monica GPU-accelerated iterative reconstruction for limited-data tomography in CBCT systems |
title | GPU-accelerated iterative reconstruction for limited-data tomography in CBCT systems |
title_full | GPU-accelerated iterative reconstruction for limited-data tomography in CBCT systems |
title_fullStr | GPU-accelerated iterative reconstruction for limited-data tomography in CBCT systems |
title_full_unstemmed | GPU-accelerated iterative reconstruction for limited-data tomography in CBCT systems |
title_short | GPU-accelerated iterative reconstruction for limited-data tomography in CBCT systems |
title_sort | gpu-accelerated iterative reconstruction for limited-data tomography in cbct systems |
topic | Software |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5952580/ https://www.ncbi.nlm.nih.gov/pubmed/29764362 http://dx.doi.org/10.1186/s12859-018-2169-3 |
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