Cargando…

Association of IL17RC and COL6A1 genetic polymorphisms with susceptibility to ossification of the thoracic posterior longitudinal ligament in Chinese patients

BACKGROUND: In our previous whole-genome sequencing study of 30 unrelated northern Chinese Han patients, we identified six single nucleotide polymorphisms (SNPs) in the interleukin 17 receptor C (IL17RC) and collagen type VI α1 chain (COL6A1) genes that were potentially associated with thoracic ossi...

Descripción completa

Detalles Bibliográficos
Autores principales: Wang, Peng, Liu, Xiao, Zhu, Bin, Ma, Yunlong, Yong, Lei, Teng, Ze, Liang, Chen, He, Guanping, Liu, Xiaoguang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5952594/
https://www.ncbi.nlm.nih.gov/pubmed/29764467
http://dx.doi.org/10.1186/s13018-018-0817-y
_version_ 1783323219837583360
author Wang, Peng
Liu, Xiao
Zhu, Bin
Ma, Yunlong
Yong, Lei
Teng, Ze
Liang, Chen
He, Guanping
Liu, Xiaoguang
author_facet Wang, Peng
Liu, Xiao
Zhu, Bin
Ma, Yunlong
Yong, Lei
Teng, Ze
Liang, Chen
He, Guanping
Liu, Xiaoguang
author_sort Wang, Peng
collection PubMed
description BACKGROUND: In our previous whole-genome sequencing study of 30 unrelated northern Chinese Han patients, we identified six single nucleotide polymorphisms (SNPs) in the interleukin 17 receptor C (IL17RC) and collagen type VI α1 chain (COL6A1) genes that were potentially associated with thoracic ossification of the posterior longitudinal ligament (T-OPLL). To determine whether these six SNPs are associated with susceptibility to T-OPLL in the northern Chinese Han population, we performed a case-control association study to confirm specific susceptible loci in the expanded samples. METHODS: The six SNPs in the IL17RC and COL6A1 genes were analyzed in 200 northern Chinese individuals (100 patients and 100 control subjects) using the Sequenom system. RESULTS: The genotype distributions and allele frequencies of each SNP in the control and patient groups were compared. rs201153092, rs13051496, rs199772854, rs76999397, and rs189013166 showed potential pathogenic loci for T-OPLL in the northern Chinese Han population, whereas rs151158105 did not. At the genotype level, the differences in the genotype frequencies of rs201153092, rs13051496, rs199772854, rs76999397, and rs189013166 between T-OPLL cases and controls reached statistical significance. CONCLUSIONS: To the best of our knowledge, this is the first association study of susceptibility genes in Han Chinese patients with T-OPLL. The results revealed five SNPs in the IL17RC and COL6A1 genes that represented potentially pathogenic mutations in patients with T-OPLL.
format Online
Article
Text
id pubmed-5952594
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-59525942018-05-21 Association of IL17RC and COL6A1 genetic polymorphisms with susceptibility to ossification of the thoracic posterior longitudinal ligament in Chinese patients Wang, Peng Liu, Xiao Zhu, Bin Ma, Yunlong Yong, Lei Teng, Ze Liang, Chen He, Guanping Liu, Xiaoguang J Orthop Surg Res Research Article BACKGROUND: In our previous whole-genome sequencing study of 30 unrelated northern Chinese Han patients, we identified six single nucleotide polymorphisms (SNPs) in the interleukin 17 receptor C (IL17RC) and collagen type VI α1 chain (COL6A1) genes that were potentially associated with thoracic ossification of the posterior longitudinal ligament (T-OPLL). To determine whether these six SNPs are associated with susceptibility to T-OPLL in the northern Chinese Han population, we performed a case-control association study to confirm specific susceptible loci in the expanded samples. METHODS: The six SNPs in the IL17RC and COL6A1 genes were analyzed in 200 northern Chinese individuals (100 patients and 100 control subjects) using the Sequenom system. RESULTS: The genotype distributions and allele frequencies of each SNP in the control and patient groups were compared. rs201153092, rs13051496, rs199772854, rs76999397, and rs189013166 showed potential pathogenic loci for T-OPLL in the northern Chinese Han population, whereas rs151158105 did not. At the genotype level, the differences in the genotype frequencies of rs201153092, rs13051496, rs199772854, rs76999397, and rs189013166 between T-OPLL cases and controls reached statistical significance. CONCLUSIONS: To the best of our knowledge, this is the first association study of susceptibility genes in Han Chinese patients with T-OPLL. The results revealed five SNPs in the IL17RC and COL6A1 genes that represented potentially pathogenic mutations in patients with T-OPLL. BioMed Central 2018-05-15 /pmc/articles/PMC5952594/ /pubmed/29764467 http://dx.doi.org/10.1186/s13018-018-0817-y Text en © The Author(s). 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Wang, Peng
Liu, Xiao
Zhu, Bin
Ma, Yunlong
Yong, Lei
Teng, Ze
Liang, Chen
He, Guanping
Liu, Xiaoguang
Association of IL17RC and COL6A1 genetic polymorphisms with susceptibility to ossification of the thoracic posterior longitudinal ligament in Chinese patients
title Association of IL17RC and COL6A1 genetic polymorphisms with susceptibility to ossification of the thoracic posterior longitudinal ligament in Chinese patients
title_full Association of IL17RC and COL6A1 genetic polymorphisms with susceptibility to ossification of the thoracic posterior longitudinal ligament in Chinese patients
title_fullStr Association of IL17RC and COL6A1 genetic polymorphisms with susceptibility to ossification of the thoracic posterior longitudinal ligament in Chinese patients
title_full_unstemmed Association of IL17RC and COL6A1 genetic polymorphisms with susceptibility to ossification of the thoracic posterior longitudinal ligament in Chinese patients
title_short Association of IL17RC and COL6A1 genetic polymorphisms with susceptibility to ossification of the thoracic posterior longitudinal ligament in Chinese patients
title_sort association of il17rc and col6a1 genetic polymorphisms with susceptibility to ossification of the thoracic posterior longitudinal ligament in chinese patients
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5952594/
https://www.ncbi.nlm.nih.gov/pubmed/29764467
http://dx.doi.org/10.1186/s13018-018-0817-y
work_keys_str_mv AT wangpeng associationofil17rcandcol6a1geneticpolymorphismswithsusceptibilitytoossificationofthethoracicposteriorlongitudinalligamentinchinesepatients
AT liuxiao associationofil17rcandcol6a1geneticpolymorphismswithsusceptibilitytoossificationofthethoracicposteriorlongitudinalligamentinchinesepatients
AT zhubin associationofil17rcandcol6a1geneticpolymorphismswithsusceptibilitytoossificationofthethoracicposteriorlongitudinalligamentinchinesepatients
AT mayunlong associationofil17rcandcol6a1geneticpolymorphismswithsusceptibilitytoossificationofthethoracicposteriorlongitudinalligamentinchinesepatients
AT yonglei associationofil17rcandcol6a1geneticpolymorphismswithsusceptibilitytoossificationofthethoracicposteriorlongitudinalligamentinchinesepatients
AT tengze associationofil17rcandcol6a1geneticpolymorphismswithsusceptibilitytoossificationofthethoracicposteriorlongitudinalligamentinchinesepatients
AT liangchen associationofil17rcandcol6a1geneticpolymorphismswithsusceptibilitytoossificationofthethoracicposteriorlongitudinalligamentinchinesepatients
AT heguanping associationofil17rcandcol6a1geneticpolymorphismswithsusceptibilitytoossificationofthethoracicposteriorlongitudinalligamentinchinesepatients
AT liuxiaoguang associationofil17rcandcol6a1geneticpolymorphismswithsusceptibilitytoossificationofthethoracicposteriorlongitudinalligamentinchinesepatients