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Fast evaluation of protein dynamics from deficient (15)N relaxation data

Simple and convenient method of protein dynamics evaluation from the insufficient experimental (15)N relaxation data is presented basing on the ratios, products, and differences of longitudinal and transverse (15)N relaxation rates obtained at a single magnetic field. Firstly, the proposed approach...

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Autores principales: Jaremko, Łukasz, Jaremko, Mariusz, Ejchart, Andrzej, Nowakowski, Michał
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5953972/
https://www.ncbi.nlm.nih.gov/pubmed/29594733
http://dx.doi.org/10.1007/s10858-018-0176-3
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author Jaremko, Łukasz
Jaremko, Mariusz
Ejchart, Andrzej
Nowakowski, Michał
author_facet Jaremko, Łukasz
Jaremko, Mariusz
Ejchart, Andrzej
Nowakowski, Michał
author_sort Jaremko, Łukasz
collection PubMed
description Simple and convenient method of protein dynamics evaluation from the insufficient experimental (15)N relaxation data is presented basing on the ratios, products, and differences of longitudinal and transverse (15)N relaxation rates obtained at a single magnetic field. Firstly, the proposed approach allows evaluating overall tumbling correlation time (nanosecond time scale). Next, local parameters of the model-free approach characterizing local mobility of backbone amide N–H vectors on two different time scales, S(2) and R(ex), can be elucidated. The generalized order parameter, S(2), describes motions on the time scale faster than the overall tumbling correlation time (pico- to nanoseconds), while the chemical exchange term, R(ex), identifies processes slower than the overall tumbling correlation time (micro- to milliseconds). Advantages and disadvantages of different methods of data handling are thoroughly discussed. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10858-018-0176-3) contains supplementary material, which is available to authorized users.
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spelling pubmed-59539722018-05-18 Fast evaluation of protein dynamics from deficient (15)N relaxation data Jaremko, Łukasz Jaremko, Mariusz Ejchart, Andrzej Nowakowski, Michał J Biomol NMR Article Simple and convenient method of protein dynamics evaluation from the insufficient experimental (15)N relaxation data is presented basing on the ratios, products, and differences of longitudinal and transverse (15)N relaxation rates obtained at a single magnetic field. Firstly, the proposed approach allows evaluating overall tumbling correlation time (nanosecond time scale). Next, local parameters of the model-free approach characterizing local mobility of backbone amide N–H vectors on two different time scales, S(2) and R(ex), can be elucidated. The generalized order parameter, S(2), describes motions on the time scale faster than the overall tumbling correlation time (pico- to nanoseconds), while the chemical exchange term, R(ex), identifies processes slower than the overall tumbling correlation time (micro- to milliseconds). Advantages and disadvantages of different methods of data handling are thoroughly discussed. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10858-018-0176-3) contains supplementary material, which is available to authorized users. Springer Netherlands 2018-03-28 2018 /pmc/articles/PMC5953972/ /pubmed/29594733 http://dx.doi.org/10.1007/s10858-018-0176-3 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Article
Jaremko, Łukasz
Jaremko, Mariusz
Ejchart, Andrzej
Nowakowski, Michał
Fast evaluation of protein dynamics from deficient (15)N relaxation data
title Fast evaluation of protein dynamics from deficient (15)N relaxation data
title_full Fast evaluation of protein dynamics from deficient (15)N relaxation data
title_fullStr Fast evaluation of protein dynamics from deficient (15)N relaxation data
title_full_unstemmed Fast evaluation of protein dynamics from deficient (15)N relaxation data
title_short Fast evaluation of protein dynamics from deficient (15)N relaxation data
title_sort fast evaluation of protein dynamics from deficient (15)n relaxation data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5953972/
https://www.ncbi.nlm.nih.gov/pubmed/29594733
http://dx.doi.org/10.1007/s10858-018-0176-3
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