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Fast evaluation of protein dynamics from deficient (15)N relaxation data
Simple and convenient method of protein dynamics evaluation from the insufficient experimental (15)N relaxation data is presented basing on the ratios, products, and differences of longitudinal and transverse (15)N relaxation rates obtained at a single magnetic field. Firstly, the proposed approach...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Netherlands
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5953972/ https://www.ncbi.nlm.nih.gov/pubmed/29594733 http://dx.doi.org/10.1007/s10858-018-0176-3 |
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author | Jaremko, Łukasz Jaremko, Mariusz Ejchart, Andrzej Nowakowski, Michał |
author_facet | Jaremko, Łukasz Jaremko, Mariusz Ejchart, Andrzej Nowakowski, Michał |
author_sort | Jaremko, Łukasz |
collection | PubMed |
description | Simple and convenient method of protein dynamics evaluation from the insufficient experimental (15)N relaxation data is presented basing on the ratios, products, and differences of longitudinal and transverse (15)N relaxation rates obtained at a single magnetic field. Firstly, the proposed approach allows evaluating overall tumbling correlation time (nanosecond time scale). Next, local parameters of the model-free approach characterizing local mobility of backbone amide N–H vectors on two different time scales, S(2) and R(ex), can be elucidated. The generalized order parameter, S(2), describes motions on the time scale faster than the overall tumbling correlation time (pico- to nanoseconds), while the chemical exchange term, R(ex), identifies processes slower than the overall tumbling correlation time (micro- to milliseconds). Advantages and disadvantages of different methods of data handling are thoroughly discussed. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10858-018-0176-3) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-5953972 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Springer Netherlands |
record_format | MEDLINE/PubMed |
spelling | pubmed-59539722018-05-18 Fast evaluation of protein dynamics from deficient (15)N relaxation data Jaremko, Łukasz Jaremko, Mariusz Ejchart, Andrzej Nowakowski, Michał J Biomol NMR Article Simple and convenient method of protein dynamics evaluation from the insufficient experimental (15)N relaxation data is presented basing on the ratios, products, and differences of longitudinal and transverse (15)N relaxation rates obtained at a single magnetic field. Firstly, the proposed approach allows evaluating overall tumbling correlation time (nanosecond time scale). Next, local parameters of the model-free approach characterizing local mobility of backbone amide N–H vectors on two different time scales, S(2) and R(ex), can be elucidated. The generalized order parameter, S(2), describes motions on the time scale faster than the overall tumbling correlation time (pico- to nanoseconds), while the chemical exchange term, R(ex), identifies processes slower than the overall tumbling correlation time (micro- to milliseconds). Advantages and disadvantages of different methods of data handling are thoroughly discussed. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10858-018-0176-3) contains supplementary material, which is available to authorized users. Springer Netherlands 2018-03-28 2018 /pmc/articles/PMC5953972/ /pubmed/29594733 http://dx.doi.org/10.1007/s10858-018-0176-3 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Article Jaremko, Łukasz Jaremko, Mariusz Ejchart, Andrzej Nowakowski, Michał Fast evaluation of protein dynamics from deficient (15)N relaxation data |
title | Fast evaluation of protein dynamics from deficient (15)N relaxation data |
title_full | Fast evaluation of protein dynamics from deficient (15)N relaxation data |
title_fullStr | Fast evaluation of protein dynamics from deficient (15)N relaxation data |
title_full_unstemmed | Fast evaluation of protein dynamics from deficient (15)N relaxation data |
title_short | Fast evaluation of protein dynamics from deficient (15)N relaxation data |
title_sort | fast evaluation of protein dynamics from deficient (15)n relaxation data |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5953972/ https://www.ncbi.nlm.nih.gov/pubmed/29594733 http://dx.doi.org/10.1007/s10858-018-0176-3 |
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