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Novel haloarchaeon Natrinema thermophila having the highest growth temperature among haloarchaea with a large genome size

Environmental temperature is one of the most important factors for the growth and survival of microorganisms. Here we describe a novel extremely halophilic archaeon (haloarchaea) designated as strain CBA1119(T) isolated from solar salt. Strain CBA1119(T) had the highest maximum and optimal growth te...

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Autores principales: Kim, Yeon Bee, Kim, Joon Yong, Song, Hye Seon, Lee, Changsu, Ahn, Seung Woo, Lee, Se Hee, Jung, Min Young, Rhee, Jin-Kyu, Kim, Juseok, Hyun, Dong-Wook, Bae, Jin-Woo, Roh, Seong Woon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5958107/
https://www.ncbi.nlm.nih.gov/pubmed/29773867
http://dx.doi.org/10.1038/s41598-018-25887-7
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author Kim, Yeon Bee
Kim, Joon Yong
Song, Hye Seon
Lee, Changsu
Ahn, Seung Woo
Lee, Se Hee
Jung, Min Young
Rhee, Jin-Kyu
Kim, Juseok
Hyun, Dong-Wook
Bae, Jin-Woo
Roh, Seong Woon
author_facet Kim, Yeon Bee
Kim, Joon Yong
Song, Hye Seon
Lee, Changsu
Ahn, Seung Woo
Lee, Se Hee
Jung, Min Young
Rhee, Jin-Kyu
Kim, Juseok
Hyun, Dong-Wook
Bae, Jin-Woo
Roh, Seong Woon
author_sort Kim, Yeon Bee
collection PubMed
description Environmental temperature is one of the most important factors for the growth and survival of microorganisms. Here we describe a novel extremely halophilic archaeon (haloarchaea) designated as strain CBA1119(T) isolated from solar salt. Strain CBA1119(T) had the highest maximum and optimal growth temperatures (66 °C and 55 °C, respectively) and one of the largest genome sizes among haloarchaea (5.1 Mb). It also had the largest number of strain-specific pan-genome orthologous groups and unique pathways among members of the genus Natrinema in the class Halobacteria. A dendrogram based on the presence/absence of genes and a phylogenetic tree constructed based on OrthoANI values highlighted the particularities of strain CBA1119(T) as compared to other Natrinema species and other haloarchaea members. The large genome of strain CBA1119(T) may provide information on genes that confer tolerance to extreme environmental conditions, which may lead to the discovery of other thermophilic strains with potential applications in industrial biotechnology.
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spelling pubmed-59581072018-05-24 Novel haloarchaeon Natrinema thermophila having the highest growth temperature among haloarchaea with a large genome size Kim, Yeon Bee Kim, Joon Yong Song, Hye Seon Lee, Changsu Ahn, Seung Woo Lee, Se Hee Jung, Min Young Rhee, Jin-Kyu Kim, Juseok Hyun, Dong-Wook Bae, Jin-Woo Roh, Seong Woon Sci Rep Article Environmental temperature is one of the most important factors for the growth and survival of microorganisms. Here we describe a novel extremely halophilic archaeon (haloarchaea) designated as strain CBA1119(T) isolated from solar salt. Strain CBA1119(T) had the highest maximum and optimal growth temperatures (66 °C and 55 °C, respectively) and one of the largest genome sizes among haloarchaea (5.1 Mb). It also had the largest number of strain-specific pan-genome orthologous groups and unique pathways among members of the genus Natrinema in the class Halobacteria. A dendrogram based on the presence/absence of genes and a phylogenetic tree constructed based on OrthoANI values highlighted the particularities of strain CBA1119(T) as compared to other Natrinema species and other haloarchaea members. The large genome of strain CBA1119(T) may provide information on genes that confer tolerance to extreme environmental conditions, which may lead to the discovery of other thermophilic strains with potential applications in industrial biotechnology. Nature Publishing Group UK 2018-05-17 /pmc/articles/PMC5958107/ /pubmed/29773867 http://dx.doi.org/10.1038/s41598-018-25887-7 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Kim, Yeon Bee
Kim, Joon Yong
Song, Hye Seon
Lee, Changsu
Ahn, Seung Woo
Lee, Se Hee
Jung, Min Young
Rhee, Jin-Kyu
Kim, Juseok
Hyun, Dong-Wook
Bae, Jin-Woo
Roh, Seong Woon
Novel haloarchaeon Natrinema thermophila having the highest growth temperature among haloarchaea with a large genome size
title Novel haloarchaeon Natrinema thermophila having the highest growth temperature among haloarchaea with a large genome size
title_full Novel haloarchaeon Natrinema thermophila having the highest growth temperature among haloarchaea with a large genome size
title_fullStr Novel haloarchaeon Natrinema thermophila having the highest growth temperature among haloarchaea with a large genome size
title_full_unstemmed Novel haloarchaeon Natrinema thermophila having the highest growth temperature among haloarchaea with a large genome size
title_short Novel haloarchaeon Natrinema thermophila having the highest growth temperature among haloarchaea with a large genome size
title_sort novel haloarchaeon natrinema thermophila having the highest growth temperature among haloarchaea with a large genome size
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5958107/
https://www.ncbi.nlm.nih.gov/pubmed/29773867
http://dx.doi.org/10.1038/s41598-018-25887-7
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