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Novel haloarchaeon Natrinema thermophila having the highest growth temperature among haloarchaea with a large genome size
Environmental temperature is one of the most important factors for the growth and survival of microorganisms. Here we describe a novel extremely halophilic archaeon (haloarchaea) designated as strain CBA1119(T) isolated from solar salt. Strain CBA1119(T) had the highest maximum and optimal growth te...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5958107/ https://www.ncbi.nlm.nih.gov/pubmed/29773867 http://dx.doi.org/10.1038/s41598-018-25887-7 |
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author | Kim, Yeon Bee Kim, Joon Yong Song, Hye Seon Lee, Changsu Ahn, Seung Woo Lee, Se Hee Jung, Min Young Rhee, Jin-Kyu Kim, Juseok Hyun, Dong-Wook Bae, Jin-Woo Roh, Seong Woon |
author_facet | Kim, Yeon Bee Kim, Joon Yong Song, Hye Seon Lee, Changsu Ahn, Seung Woo Lee, Se Hee Jung, Min Young Rhee, Jin-Kyu Kim, Juseok Hyun, Dong-Wook Bae, Jin-Woo Roh, Seong Woon |
author_sort | Kim, Yeon Bee |
collection | PubMed |
description | Environmental temperature is one of the most important factors for the growth and survival of microorganisms. Here we describe a novel extremely halophilic archaeon (haloarchaea) designated as strain CBA1119(T) isolated from solar salt. Strain CBA1119(T) had the highest maximum and optimal growth temperatures (66 °C and 55 °C, respectively) and one of the largest genome sizes among haloarchaea (5.1 Mb). It also had the largest number of strain-specific pan-genome orthologous groups and unique pathways among members of the genus Natrinema in the class Halobacteria. A dendrogram based on the presence/absence of genes and a phylogenetic tree constructed based on OrthoANI values highlighted the particularities of strain CBA1119(T) as compared to other Natrinema species and other haloarchaea members. The large genome of strain CBA1119(T) may provide information on genes that confer tolerance to extreme environmental conditions, which may lead to the discovery of other thermophilic strains with potential applications in industrial biotechnology. |
format | Online Article Text |
id | pubmed-5958107 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-59581072018-05-24 Novel haloarchaeon Natrinema thermophila having the highest growth temperature among haloarchaea with a large genome size Kim, Yeon Bee Kim, Joon Yong Song, Hye Seon Lee, Changsu Ahn, Seung Woo Lee, Se Hee Jung, Min Young Rhee, Jin-Kyu Kim, Juseok Hyun, Dong-Wook Bae, Jin-Woo Roh, Seong Woon Sci Rep Article Environmental temperature is one of the most important factors for the growth and survival of microorganisms. Here we describe a novel extremely halophilic archaeon (haloarchaea) designated as strain CBA1119(T) isolated from solar salt. Strain CBA1119(T) had the highest maximum and optimal growth temperatures (66 °C and 55 °C, respectively) and one of the largest genome sizes among haloarchaea (5.1 Mb). It also had the largest number of strain-specific pan-genome orthologous groups and unique pathways among members of the genus Natrinema in the class Halobacteria. A dendrogram based on the presence/absence of genes and a phylogenetic tree constructed based on OrthoANI values highlighted the particularities of strain CBA1119(T) as compared to other Natrinema species and other haloarchaea members. The large genome of strain CBA1119(T) may provide information on genes that confer tolerance to extreme environmental conditions, which may lead to the discovery of other thermophilic strains with potential applications in industrial biotechnology. Nature Publishing Group UK 2018-05-17 /pmc/articles/PMC5958107/ /pubmed/29773867 http://dx.doi.org/10.1038/s41598-018-25887-7 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Kim, Yeon Bee Kim, Joon Yong Song, Hye Seon Lee, Changsu Ahn, Seung Woo Lee, Se Hee Jung, Min Young Rhee, Jin-Kyu Kim, Juseok Hyun, Dong-Wook Bae, Jin-Woo Roh, Seong Woon Novel haloarchaeon Natrinema thermophila having the highest growth temperature among haloarchaea with a large genome size |
title | Novel haloarchaeon Natrinema thermophila having the highest growth temperature among haloarchaea with a large genome size |
title_full | Novel haloarchaeon Natrinema thermophila having the highest growth temperature among haloarchaea with a large genome size |
title_fullStr | Novel haloarchaeon Natrinema thermophila having the highest growth temperature among haloarchaea with a large genome size |
title_full_unstemmed | Novel haloarchaeon Natrinema thermophila having the highest growth temperature among haloarchaea with a large genome size |
title_short | Novel haloarchaeon Natrinema thermophila having the highest growth temperature among haloarchaea with a large genome size |
title_sort | novel haloarchaeon natrinema thermophila having the highest growth temperature among haloarchaea with a large genome size |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5958107/ https://www.ncbi.nlm.nih.gov/pubmed/29773867 http://dx.doi.org/10.1038/s41598-018-25887-7 |
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