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The Data Gap in the EHR for Clinical Research Eligibility Screening
Much effort has been devoted to leverage EHR data for matching patients into clinical trials. However, EHRs may not contain all important data elements for clinical research eligibility screening. To better design research-friendly EHRs, an important step is to identify data elements frequently used...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Medical Informatics Association
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5961795/ https://www.ncbi.nlm.nih.gov/pubmed/29888090 |
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author | Butler, Alex Wei, Wei Yuan, Chi Kang, Tian Si, Yuqi Weng, Chunhua |
author_facet | Butler, Alex Wei, Wei Yuan, Chi Kang, Tian Si, Yuqi Weng, Chunhua |
author_sort | Butler, Alex |
collection | PubMed |
description | Much effort has been devoted to leverage EHR data for matching patients into clinical trials. However, EHRs may not contain all important data elements for clinical research eligibility screening. To better design research-friendly EHRs, an important step is to identify data elements frequently used for eligibility screening but not yet available in EHRs. This study fills this knowledge gap. Using the Alzheimer’s disease domain as an example, we performed text mining on the eligibility criteria text in Clinicaltrials.gov to identify frequently used eligibility criteria concepts. We compared them to the EHR data elements of a cohort of Alzheimer’s Disease patients to assess the data gap by usingthe OMOP Common Data Model to standardize the representations for both criteria concepts and EHR data elements. We identified the most common SNOMED CT concepts used in Alzheimer ‘s Disease trials, andfound 40% of common eligibility criteria concepts were not even defined in the concept space in the EHR dataset for a cohort of Alzheimer ‘sDisease patients, indicating a significant data gap may impede EHR-based eligibility screening. The results of this study can be useful for designing targeted research data collection forms to help fill the data gap in the EHR. |
format | Online Article Text |
id | pubmed-5961795 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | American Medical Informatics Association |
record_format | MEDLINE/PubMed |
spelling | pubmed-59617952018-06-08 The Data Gap in the EHR for Clinical Research Eligibility Screening Butler, Alex Wei, Wei Yuan, Chi Kang, Tian Si, Yuqi Weng, Chunhua AMIA Jt Summits Transl Sci Proc Articles Much effort has been devoted to leverage EHR data for matching patients into clinical trials. However, EHRs may not contain all important data elements for clinical research eligibility screening. To better design research-friendly EHRs, an important step is to identify data elements frequently used for eligibility screening but not yet available in EHRs. This study fills this knowledge gap. Using the Alzheimer’s disease domain as an example, we performed text mining on the eligibility criteria text in Clinicaltrials.gov to identify frequently used eligibility criteria concepts. We compared them to the EHR data elements of a cohort of Alzheimer’s Disease patients to assess the data gap by usingthe OMOP Common Data Model to standardize the representations for both criteria concepts and EHR data elements. We identified the most common SNOMED CT concepts used in Alzheimer ‘s Disease trials, andfound 40% of common eligibility criteria concepts were not even defined in the concept space in the EHR dataset for a cohort of Alzheimer ‘sDisease patients, indicating a significant data gap may impede EHR-based eligibility screening. The results of this study can be useful for designing targeted research data collection forms to help fill the data gap in the EHR. American Medical Informatics Association 2018-05-18 /pmc/articles/PMC5961795/ /pubmed/29888090 Text en ©2018 AMIA - All rights reserved. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose |
spellingShingle | Articles Butler, Alex Wei, Wei Yuan, Chi Kang, Tian Si, Yuqi Weng, Chunhua The Data Gap in the EHR for Clinical Research Eligibility Screening |
title | The Data Gap in the EHR for Clinical Research Eligibility Screening |
title_full | The Data Gap in the EHR for Clinical Research Eligibility Screening |
title_fullStr | The Data Gap in the EHR for Clinical Research Eligibility Screening |
title_full_unstemmed | The Data Gap in the EHR for Clinical Research Eligibility Screening |
title_short | The Data Gap in the EHR for Clinical Research Eligibility Screening |
title_sort | data gap in the ehr for clinical research eligibility screening |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5961795/ https://www.ncbi.nlm.nih.gov/pubmed/29888090 |
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