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Adapting Word Embeddings from Multiple Domains to Symptom Recognition from Psychiatric Notes

Mental health is increasingly recognized an important topic in healthcare. Information concerning psychiatric symptoms is critical for the timely diagnosis of mental disorders, as well as for the personalization of interventions. However, the diversity and sparsity of psychiatric symptoms make it ch...

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Autores principales: Zhang, Yaoyun, Li, Hee-Jin, Wang, Jingqi, Cohen, Trevor, Roberts, Kirk, Xu, Hua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Medical Informatics Association 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5961810/
https://www.ncbi.nlm.nih.gov/pubmed/29888086
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author Zhang, Yaoyun
Li, Hee-Jin
Wang, Jingqi
Cohen, Trevor
Roberts, Kirk
Xu, Hua
author_facet Zhang, Yaoyun
Li, Hee-Jin
Wang, Jingqi
Cohen, Trevor
Roberts, Kirk
Xu, Hua
author_sort Zhang, Yaoyun
collection PubMed
description Mental health is increasingly recognized an important topic in healthcare. Information concerning psychiatric symptoms is critical for the timely diagnosis of mental disorders, as well as for the personalization of interventions. However, the diversity and sparsity of psychiatric symptoms make it challenging for conventional natural language processing techniques to automatically extract such information from clinical text. To address this problem, this study takes the initiative to use and adapt word embeddings from four source domains – intensive care, biomedical literature, Wikipedia and Psychiatric Forum – to recognize symptoms in the target domain of psychiatry. We investigated four different approaches including 1) only using word embeddings of the source domain, 2) directly combining data of the source and target to generate word embeddings, 3) assigning different weights to word embeddings, and 4) retraining the word embedding model of the source domain using a corpus of the target domain. To the best of our knowledge, this is the first work of adapting multiple word embeddings of external domains to improve psychiatric symptom recognition in clinical text. Experimental results showed that the last two approaches outperformed the baseline methods, indicating the effectiveness of our new strategies to leverage embeddings from other domains.
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spelling pubmed-59618102018-06-08 Adapting Word Embeddings from Multiple Domains to Symptom Recognition from Psychiatric Notes Zhang, Yaoyun Li, Hee-Jin Wang, Jingqi Cohen, Trevor Roberts, Kirk Xu, Hua AMIA Jt Summits Transl Sci Proc Articles Mental health is increasingly recognized an important topic in healthcare. Information concerning psychiatric symptoms is critical for the timely diagnosis of mental disorders, as well as for the personalization of interventions. However, the diversity and sparsity of psychiatric symptoms make it challenging for conventional natural language processing techniques to automatically extract such information from clinical text. To address this problem, this study takes the initiative to use and adapt word embeddings from four source domains – intensive care, biomedical literature, Wikipedia and Psychiatric Forum – to recognize symptoms in the target domain of psychiatry. We investigated four different approaches including 1) only using word embeddings of the source domain, 2) directly combining data of the source and target to generate word embeddings, 3) assigning different weights to word embeddings, and 4) retraining the word embedding model of the source domain using a corpus of the target domain. To the best of our knowledge, this is the first work of adapting multiple word embeddings of external domains to improve psychiatric symptom recognition in clinical text. Experimental results showed that the last two approaches outperformed the baseline methods, indicating the effectiveness of our new strategies to leverage embeddings from other domains. American Medical Informatics Association 2018-05-18 /pmc/articles/PMC5961810/ /pubmed/29888086 Text en ©2018 AMIA - All rights reserved. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose
spellingShingle Articles
Zhang, Yaoyun
Li, Hee-Jin
Wang, Jingqi
Cohen, Trevor
Roberts, Kirk
Xu, Hua
Adapting Word Embeddings from Multiple Domains to Symptom Recognition from Psychiatric Notes
title Adapting Word Embeddings from Multiple Domains to Symptom Recognition from Psychiatric Notes
title_full Adapting Word Embeddings from Multiple Domains to Symptom Recognition from Psychiatric Notes
title_fullStr Adapting Word Embeddings from Multiple Domains to Symptom Recognition from Psychiatric Notes
title_full_unstemmed Adapting Word Embeddings from Multiple Domains to Symptom Recognition from Psychiatric Notes
title_short Adapting Word Embeddings from Multiple Domains to Symptom Recognition from Psychiatric Notes
title_sort adapting word embeddings from multiple domains to symptom recognition from psychiatric notes
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5961810/
https://www.ncbi.nlm.nih.gov/pubmed/29888086
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