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Using Machine Learning Algorithms to Predict Risk for Development of Calciphylaxis in Patients with Chronic Kidney Disease

Calciphylaxis is a disorder that results in necrotic cutaneous lesions with a high rate of mortality. Due to its rarity and complexity, the risk factors for and the disease mechanism of calciphylaxis are not fully understood. This work focuses on the use of machine learning to both predict disease r...

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Autores principales: Kleiman, Ross S., LaRose, Eric R., Badger, Jonathan C., Page, David, Caldwell, Michael D., Clay, James A., Peissig, Peggy L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Medical Informatics Association 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5961821/
https://www.ncbi.nlm.nih.gov/pubmed/29888059
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author Kleiman, Ross S.
LaRose, Eric R.
Badger, Jonathan C.
Page, David
Caldwell, Michael D.
Clay, James A.
Peissig, Peggy L.
author_facet Kleiman, Ross S.
LaRose, Eric R.
Badger, Jonathan C.
Page, David
Caldwell, Michael D.
Clay, James A.
Peissig, Peggy L.
author_sort Kleiman, Ross S.
collection PubMed
description Calciphylaxis is a disorder that results in necrotic cutaneous lesions with a high rate of mortality. Due to its rarity and complexity, the risk factors for and the disease mechanism of calciphylaxis are not fully understood. This work focuses on the use of machine learning to both predict disease risk and model the contributing factors learned from an electronic health record data set. We present the results of four modeling approaches on several subpopulations of patients with chronic kidney disease (CKD). We find that modeling calciphylaxis risk with random forests learned from binary feature data produces strong models, and in the case of predicting calciphylaxis development among stage 4 CKD patients, we achieve an AUC-ROC of 0.8718. This ability to successfully predict calciphylaxis may provide an excellent opportunity for clinical translation of the predictive models presented in this paper.
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spelling pubmed-59618212018-06-08 Using Machine Learning Algorithms to Predict Risk for Development of Calciphylaxis in Patients with Chronic Kidney Disease Kleiman, Ross S. LaRose, Eric R. Badger, Jonathan C. Page, David Caldwell, Michael D. Clay, James A. Peissig, Peggy L. AMIA Jt Summits Transl Sci Proc Articles Calciphylaxis is a disorder that results in necrotic cutaneous lesions with a high rate of mortality. Due to its rarity and complexity, the risk factors for and the disease mechanism of calciphylaxis are not fully understood. This work focuses on the use of machine learning to both predict disease risk and model the contributing factors learned from an electronic health record data set. We present the results of four modeling approaches on several subpopulations of patients with chronic kidney disease (CKD). We find that modeling calciphylaxis risk with random forests learned from binary feature data produces strong models, and in the case of predicting calciphylaxis development among stage 4 CKD patients, we achieve an AUC-ROC of 0.8718. This ability to successfully predict calciphylaxis may provide an excellent opportunity for clinical translation of the predictive models presented in this paper. American Medical Informatics Association 2018-05-18 /pmc/articles/PMC5961821/ /pubmed/29888059 Text en ©2018 AMIA - All rights reserved. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose
spellingShingle Articles
Kleiman, Ross S.
LaRose, Eric R.
Badger, Jonathan C.
Page, David
Caldwell, Michael D.
Clay, James A.
Peissig, Peggy L.
Using Machine Learning Algorithms to Predict Risk for Development of Calciphylaxis in Patients with Chronic Kidney Disease
title Using Machine Learning Algorithms to Predict Risk for Development of Calciphylaxis in Patients with Chronic Kidney Disease
title_full Using Machine Learning Algorithms to Predict Risk for Development of Calciphylaxis in Patients with Chronic Kidney Disease
title_fullStr Using Machine Learning Algorithms to Predict Risk for Development of Calciphylaxis in Patients with Chronic Kidney Disease
title_full_unstemmed Using Machine Learning Algorithms to Predict Risk for Development of Calciphylaxis in Patients with Chronic Kidney Disease
title_short Using Machine Learning Algorithms to Predict Risk for Development of Calciphylaxis in Patients with Chronic Kidney Disease
title_sort using machine learning algorithms to predict risk for development of calciphylaxis in patients with chronic kidney disease
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5961821/
https://www.ncbi.nlm.nih.gov/pubmed/29888059
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