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SPP1 and AGER as potential prognostic biomarkers for lung adenocarcinoma
Overdue treatment and prognostic evaluation lead to low survival rates in patients with lung adenocarcinoma (LUAD). To date, effective biomarkers for prognosis are still required. The aim of the present study was to screen differentially expressed genes (DEGs) as biomarkers for prognostic evaluation...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
D.A. Spandidos
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5962856/ https://www.ncbi.nlm.nih.gov/pubmed/29849788 http://dx.doi.org/10.3892/ol.2018.8235 |
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author | Zhang, Weiguo Fan, Junli Chen, Qiang Lei, Caipeng Qiao, Bin Liu, Qin |
author_facet | Zhang, Weiguo Fan, Junli Chen, Qiang Lei, Caipeng Qiao, Bin Liu, Qin |
author_sort | Zhang, Weiguo |
collection | PubMed |
description | Overdue treatment and prognostic evaluation lead to low survival rates in patients with lung adenocarcinoma (LUAD). To date, effective biomarkers for prognosis are still required. The aim of the present study was to screen differentially expressed genes (DEGs) as biomarkers for prognostic evaluation of LUAD. DEGs in tumor and normal samples were identified and analyzed for Kyoto Encyclopedia of Genes and Genomes/Gene Ontology functional enrichments. The common genes that are up and downregulated were selected for prognostic analysis using RNAseq data in The Cancer Genome Atlas. Differential expression analysis was performed with 164 samples in GSE10072 and GSE7670 datasets. A total of 484 DEGs that were present in GSE10072 and GSE7670 datasets were screened, including secreted phosphoprotein 1 (SPP1) that was highly expressed and DEGs ficolin 3, advanced glycosylation end-product specific receptor (AGER), transmembrane protein 100 that were lowly expressed in tumor tissues. These four key genes were subsequently verified using an independent dataset, GSE19804. The gene expression model was consistent with GSE10072 and GSE7670 datasets. The dysregulation of highly expressed SPP1 and lowly expressed AGER significantly reduced the median survival time of patients with LUAD. These findings suggest that SPP1 and AGER are risk factors for LUAD, and these two genes may be utilized in the prognostic evaluation of patients with LUAD. Additionally, the key genes and functional enrichments may provide a reference for investigating the molecular expression mechanisms underlying LUAD. |
format | Online Article Text |
id | pubmed-5962856 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | D.A. Spandidos |
record_format | MEDLINE/PubMed |
spelling | pubmed-59628562018-05-30 SPP1 and AGER as potential prognostic biomarkers for lung adenocarcinoma Zhang, Weiguo Fan, Junli Chen, Qiang Lei, Caipeng Qiao, Bin Liu, Qin Oncol Lett Articles Overdue treatment and prognostic evaluation lead to low survival rates in patients with lung adenocarcinoma (LUAD). To date, effective biomarkers for prognosis are still required. The aim of the present study was to screen differentially expressed genes (DEGs) as biomarkers for prognostic evaluation of LUAD. DEGs in tumor and normal samples were identified and analyzed for Kyoto Encyclopedia of Genes and Genomes/Gene Ontology functional enrichments. The common genes that are up and downregulated were selected for prognostic analysis using RNAseq data in The Cancer Genome Atlas. Differential expression analysis was performed with 164 samples in GSE10072 and GSE7670 datasets. A total of 484 DEGs that were present in GSE10072 and GSE7670 datasets were screened, including secreted phosphoprotein 1 (SPP1) that was highly expressed and DEGs ficolin 3, advanced glycosylation end-product specific receptor (AGER), transmembrane protein 100 that were lowly expressed in tumor tissues. These four key genes were subsequently verified using an independent dataset, GSE19804. The gene expression model was consistent with GSE10072 and GSE7670 datasets. The dysregulation of highly expressed SPP1 and lowly expressed AGER significantly reduced the median survival time of patients with LUAD. These findings suggest that SPP1 and AGER are risk factors for LUAD, and these two genes may be utilized in the prognostic evaluation of patients with LUAD. Additionally, the key genes and functional enrichments may provide a reference for investigating the molecular expression mechanisms underlying LUAD. D.A. Spandidos 2018-05 2018-03-12 /pmc/articles/PMC5962856/ /pubmed/29849788 http://dx.doi.org/10.3892/ol.2018.8235 Text en Copyright: © Zhang et al. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made. |
spellingShingle | Articles Zhang, Weiguo Fan, Junli Chen, Qiang Lei, Caipeng Qiao, Bin Liu, Qin SPP1 and AGER as potential prognostic biomarkers for lung adenocarcinoma |
title | SPP1 and AGER as potential prognostic biomarkers for lung adenocarcinoma |
title_full | SPP1 and AGER as potential prognostic biomarkers for lung adenocarcinoma |
title_fullStr | SPP1 and AGER as potential prognostic biomarkers for lung adenocarcinoma |
title_full_unstemmed | SPP1 and AGER as potential prognostic biomarkers for lung adenocarcinoma |
title_short | SPP1 and AGER as potential prognostic biomarkers for lung adenocarcinoma |
title_sort | spp1 and ager as potential prognostic biomarkers for lung adenocarcinoma |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5962856/ https://www.ncbi.nlm.nih.gov/pubmed/29849788 http://dx.doi.org/10.3892/ol.2018.8235 |
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