Cargando…

Resting-State Brain Functional Hyper-Network Construction Based on Elastic Net and Group Lasso Methods

Brain network analysis has been widely applied in neuroimaging studies. A hyper-network construction method was previously proposed to characterize the high-order relationships among multiple brain regions, where every edge is connected to more than two brain regions and can be represented by a hype...

Descripción completa

Detalles Bibliográficos
Autores principales: Guo, Hao, Li, Yao, Xu, Yong, Jin, Yanyi, Xiang, Jie, Chen, Junjie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5962886/
https://www.ncbi.nlm.nih.gov/pubmed/29867426
http://dx.doi.org/10.3389/fninf.2018.00025
_version_ 1783324960732741632
author Guo, Hao
Li, Yao
Xu, Yong
Jin, Yanyi
Xiang, Jie
Chen, Junjie
author_facet Guo, Hao
Li, Yao
Xu, Yong
Jin, Yanyi
Xiang, Jie
Chen, Junjie
author_sort Guo, Hao
collection PubMed
description Brain network analysis has been widely applied in neuroimaging studies. A hyper-network construction method was previously proposed to characterize the high-order relationships among multiple brain regions, where every edge is connected to more than two brain regions and can be represented by a hyper-graph. A brain functional hyper-network is constructed by a sparse linear regression model using resting-state functional magnetic resonance imaging (fMRI) time series, which in previous studies has been solved by the lasso method. Despite its successful application in many studies, the lasso method has some limitations, including an inability to explain the grouping effect. That is, using the lasso method may cause relevant brain regions be missed in selecting related regions. Ideally, a hyper-edge construction method should be able to select interacting brain regions as accurately as possible. To solve this problem, we took into account the grouping effect among brain regions and proposed two methods to improve the construction of the hyper-network: the elastic net and the group lasso. The three methods were applied to the construction of functional hyper-networks in depressed patients and normal controls. The results showed structural differences among the hyper-networks constructed by the three methods. The hyper-network structure obtained by the lasso was similar to that obtained by the elastic net method but very different from that obtained by the group lasso. The classification results indicated that the elastic net method achieved better classification results than the lasso method with the two proposed methods of hyper-network construction. The elastic net method can effectively solve the grouping effect and achieve better classification performance.
format Online
Article
Text
id pubmed-5962886
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-59628862018-06-04 Resting-State Brain Functional Hyper-Network Construction Based on Elastic Net and Group Lasso Methods Guo, Hao Li, Yao Xu, Yong Jin, Yanyi Xiang, Jie Chen, Junjie Front Neuroinform Neuroscience Brain network analysis has been widely applied in neuroimaging studies. A hyper-network construction method was previously proposed to characterize the high-order relationships among multiple brain regions, where every edge is connected to more than two brain regions and can be represented by a hyper-graph. A brain functional hyper-network is constructed by a sparse linear regression model using resting-state functional magnetic resonance imaging (fMRI) time series, which in previous studies has been solved by the lasso method. Despite its successful application in many studies, the lasso method has some limitations, including an inability to explain the grouping effect. That is, using the lasso method may cause relevant brain regions be missed in selecting related regions. Ideally, a hyper-edge construction method should be able to select interacting brain regions as accurately as possible. To solve this problem, we took into account the grouping effect among brain regions and proposed two methods to improve the construction of the hyper-network: the elastic net and the group lasso. The three methods were applied to the construction of functional hyper-networks in depressed patients and normal controls. The results showed structural differences among the hyper-networks constructed by the three methods. The hyper-network structure obtained by the lasso was similar to that obtained by the elastic net method but very different from that obtained by the group lasso. The classification results indicated that the elastic net method achieved better classification results than the lasso method with the two proposed methods of hyper-network construction. The elastic net method can effectively solve the grouping effect and achieve better classification performance. Frontiers Media S.A. 2018-05-15 /pmc/articles/PMC5962886/ /pubmed/29867426 http://dx.doi.org/10.3389/fninf.2018.00025 Text en Copyright © 2018 Guo, Li, Xu, Jin, Xiang and Chen. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Guo, Hao
Li, Yao
Xu, Yong
Jin, Yanyi
Xiang, Jie
Chen, Junjie
Resting-State Brain Functional Hyper-Network Construction Based on Elastic Net and Group Lasso Methods
title Resting-State Brain Functional Hyper-Network Construction Based on Elastic Net and Group Lasso Methods
title_full Resting-State Brain Functional Hyper-Network Construction Based on Elastic Net and Group Lasso Methods
title_fullStr Resting-State Brain Functional Hyper-Network Construction Based on Elastic Net and Group Lasso Methods
title_full_unstemmed Resting-State Brain Functional Hyper-Network Construction Based on Elastic Net and Group Lasso Methods
title_short Resting-State Brain Functional Hyper-Network Construction Based on Elastic Net and Group Lasso Methods
title_sort resting-state brain functional hyper-network construction based on elastic net and group lasso methods
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5962886/
https://www.ncbi.nlm.nih.gov/pubmed/29867426
http://dx.doi.org/10.3389/fninf.2018.00025
work_keys_str_mv AT guohao restingstatebrainfunctionalhypernetworkconstructionbasedonelasticnetandgrouplassomethods
AT liyao restingstatebrainfunctionalhypernetworkconstructionbasedonelasticnetandgrouplassomethods
AT xuyong restingstatebrainfunctionalhypernetworkconstructionbasedonelasticnetandgrouplassomethods
AT jinyanyi restingstatebrainfunctionalhypernetworkconstructionbasedonelasticnetandgrouplassomethods
AT xiangjie restingstatebrainfunctionalhypernetworkconstructionbasedonelasticnetandgrouplassomethods
AT chenjunjie restingstatebrainfunctionalhypernetworkconstructionbasedonelasticnetandgrouplassomethods