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Resting-State Brain Functional Hyper-Network Construction Based on Elastic Net and Group Lasso Methods
Brain network analysis has been widely applied in neuroimaging studies. A hyper-network construction method was previously proposed to characterize the high-order relationships among multiple brain regions, where every edge is connected to more than two brain regions and can be represented by a hype...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5962886/ https://www.ncbi.nlm.nih.gov/pubmed/29867426 http://dx.doi.org/10.3389/fninf.2018.00025 |
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author | Guo, Hao Li, Yao Xu, Yong Jin, Yanyi Xiang, Jie Chen, Junjie |
author_facet | Guo, Hao Li, Yao Xu, Yong Jin, Yanyi Xiang, Jie Chen, Junjie |
author_sort | Guo, Hao |
collection | PubMed |
description | Brain network analysis has been widely applied in neuroimaging studies. A hyper-network construction method was previously proposed to characterize the high-order relationships among multiple brain regions, where every edge is connected to more than two brain regions and can be represented by a hyper-graph. A brain functional hyper-network is constructed by a sparse linear regression model using resting-state functional magnetic resonance imaging (fMRI) time series, which in previous studies has been solved by the lasso method. Despite its successful application in many studies, the lasso method has some limitations, including an inability to explain the grouping effect. That is, using the lasso method may cause relevant brain regions be missed in selecting related regions. Ideally, a hyper-edge construction method should be able to select interacting brain regions as accurately as possible. To solve this problem, we took into account the grouping effect among brain regions and proposed two methods to improve the construction of the hyper-network: the elastic net and the group lasso. The three methods were applied to the construction of functional hyper-networks in depressed patients and normal controls. The results showed structural differences among the hyper-networks constructed by the three methods. The hyper-network structure obtained by the lasso was similar to that obtained by the elastic net method but very different from that obtained by the group lasso. The classification results indicated that the elastic net method achieved better classification results than the lasso method with the two proposed methods of hyper-network construction. The elastic net method can effectively solve the grouping effect and achieve better classification performance. |
format | Online Article Text |
id | pubmed-5962886 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-59628862018-06-04 Resting-State Brain Functional Hyper-Network Construction Based on Elastic Net and Group Lasso Methods Guo, Hao Li, Yao Xu, Yong Jin, Yanyi Xiang, Jie Chen, Junjie Front Neuroinform Neuroscience Brain network analysis has been widely applied in neuroimaging studies. A hyper-network construction method was previously proposed to characterize the high-order relationships among multiple brain regions, where every edge is connected to more than two brain regions and can be represented by a hyper-graph. A brain functional hyper-network is constructed by a sparse linear regression model using resting-state functional magnetic resonance imaging (fMRI) time series, which in previous studies has been solved by the lasso method. Despite its successful application in many studies, the lasso method has some limitations, including an inability to explain the grouping effect. That is, using the lasso method may cause relevant brain regions be missed in selecting related regions. Ideally, a hyper-edge construction method should be able to select interacting brain regions as accurately as possible. To solve this problem, we took into account the grouping effect among brain regions and proposed two methods to improve the construction of the hyper-network: the elastic net and the group lasso. The three methods were applied to the construction of functional hyper-networks in depressed patients and normal controls. The results showed structural differences among the hyper-networks constructed by the three methods. The hyper-network structure obtained by the lasso was similar to that obtained by the elastic net method but very different from that obtained by the group lasso. The classification results indicated that the elastic net method achieved better classification results than the lasso method with the two proposed methods of hyper-network construction. The elastic net method can effectively solve the grouping effect and achieve better classification performance. Frontiers Media S.A. 2018-05-15 /pmc/articles/PMC5962886/ /pubmed/29867426 http://dx.doi.org/10.3389/fninf.2018.00025 Text en Copyright © 2018 Guo, Li, Xu, Jin, Xiang and Chen. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Guo, Hao Li, Yao Xu, Yong Jin, Yanyi Xiang, Jie Chen, Junjie Resting-State Brain Functional Hyper-Network Construction Based on Elastic Net and Group Lasso Methods |
title | Resting-State Brain Functional Hyper-Network Construction Based on Elastic Net and Group Lasso Methods |
title_full | Resting-State Brain Functional Hyper-Network Construction Based on Elastic Net and Group Lasso Methods |
title_fullStr | Resting-State Brain Functional Hyper-Network Construction Based on Elastic Net and Group Lasso Methods |
title_full_unstemmed | Resting-State Brain Functional Hyper-Network Construction Based on Elastic Net and Group Lasso Methods |
title_short | Resting-State Brain Functional Hyper-Network Construction Based on Elastic Net and Group Lasso Methods |
title_sort | resting-state brain functional hyper-network construction based on elastic net and group lasso methods |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5962886/ https://www.ncbi.nlm.nih.gov/pubmed/29867426 http://dx.doi.org/10.3389/fninf.2018.00025 |
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