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Estimates of genomic heritability and genome-wide association study for fatty acids profile in Santa Inês sheep
BACKGROUND: Despite the health concerns and nutritional importance of fatty acids, there is a relative paucity of studies in the literature that report genetic or genomic parameters, especially in the case of sheep populations. To investigate the genetic architecture of fatty acid composition of she...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5963081/ https://www.ncbi.nlm.nih.gov/pubmed/29783944 http://dx.doi.org/10.1186/s12864-018-4777-8 |
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author | Rovadoscki, G. A. Pertile, S. F. N. Alvarenga, A. B. Cesar, A. S. M. Pértille, F. Petrini, J. Franzo, V. Soares, W. V. B. Morota, G. Spangler, M. L. Pinto, L. F. B. Carvalho, G. G. P. Lanna, D. P. D. Coutinho, L. L. Mourão, G. B. |
author_facet | Rovadoscki, G. A. Pertile, S. F. N. Alvarenga, A. B. Cesar, A. S. M. Pértille, F. Petrini, J. Franzo, V. Soares, W. V. B. Morota, G. Spangler, M. L. Pinto, L. F. B. Carvalho, G. G. P. Lanna, D. P. D. Coutinho, L. L. Mourão, G. B. |
author_sort | Rovadoscki, G. A. |
collection | PubMed |
description | BACKGROUND: Despite the health concerns and nutritional importance of fatty acids, there is a relative paucity of studies in the literature that report genetic or genomic parameters, especially in the case of sheep populations. To investigate the genetic architecture of fatty acid composition of sheep, we conducted genome-wide association studies (GWAS) and estimated genomic heritabilities for fatty acid profile in Longissimus dorsi muscle of 216 male sheep. RESULTS: Genomic heritability estimates for fatty acid content ranged from 0.25 to 0.46, indicating that substantial genetic variation exists for the evaluated traits. Therefore, it is possible to alter fatty acid profiles through selection. Twenty-seven genomic regions of 10 adjacent SNPs associated with fatty acids composition were identified on chromosomes 1, 2, 3, 5, 8, 12, 14, 15, 16, 17, and 18, each explaining ≥0.30% of the additive genetic variance. Twenty-three genes supporting the understanding of genetic mechanisms of fat composition in sheep were identified in these regions, such as DGAT2, TRHDE, TPH2, ME1, C6, C7, UBE3D, PARP14, and MRPS30. CONCLUSIONS: Estimates of genomic heritabilities and elucidating important genomic regions can contribute to a better understanding of the genetic control of fatty acid deposition and improve the selection strategies to enhance meat quality and health attributes. |
format | Online Article Text |
id | pubmed-5963081 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-59630812018-06-25 Estimates of genomic heritability and genome-wide association study for fatty acids profile in Santa Inês sheep Rovadoscki, G. A. Pertile, S. F. N. Alvarenga, A. B. Cesar, A. S. M. Pértille, F. Petrini, J. Franzo, V. Soares, W. V. B. Morota, G. Spangler, M. L. Pinto, L. F. B. Carvalho, G. G. P. Lanna, D. P. D. Coutinho, L. L. Mourão, G. B. BMC Genomics Research Article BACKGROUND: Despite the health concerns and nutritional importance of fatty acids, there is a relative paucity of studies in the literature that report genetic or genomic parameters, especially in the case of sheep populations. To investigate the genetic architecture of fatty acid composition of sheep, we conducted genome-wide association studies (GWAS) and estimated genomic heritabilities for fatty acid profile in Longissimus dorsi muscle of 216 male sheep. RESULTS: Genomic heritability estimates for fatty acid content ranged from 0.25 to 0.46, indicating that substantial genetic variation exists for the evaluated traits. Therefore, it is possible to alter fatty acid profiles through selection. Twenty-seven genomic regions of 10 adjacent SNPs associated with fatty acids composition were identified on chromosomes 1, 2, 3, 5, 8, 12, 14, 15, 16, 17, and 18, each explaining ≥0.30% of the additive genetic variance. Twenty-three genes supporting the understanding of genetic mechanisms of fat composition in sheep were identified in these regions, such as DGAT2, TRHDE, TPH2, ME1, C6, C7, UBE3D, PARP14, and MRPS30. CONCLUSIONS: Estimates of genomic heritabilities and elucidating important genomic regions can contribute to a better understanding of the genetic control of fatty acid deposition and improve the selection strategies to enhance meat quality and health attributes. BioMed Central 2018-05-21 /pmc/articles/PMC5963081/ /pubmed/29783944 http://dx.doi.org/10.1186/s12864-018-4777-8 Text en © The Author(s). 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Rovadoscki, G. A. Pertile, S. F. N. Alvarenga, A. B. Cesar, A. S. M. Pértille, F. Petrini, J. Franzo, V. Soares, W. V. B. Morota, G. Spangler, M. L. Pinto, L. F. B. Carvalho, G. G. P. Lanna, D. P. D. Coutinho, L. L. Mourão, G. B. Estimates of genomic heritability and genome-wide association study for fatty acids profile in Santa Inês sheep |
title | Estimates of genomic heritability and genome-wide association study for fatty acids profile in Santa Inês sheep |
title_full | Estimates of genomic heritability and genome-wide association study for fatty acids profile in Santa Inês sheep |
title_fullStr | Estimates of genomic heritability and genome-wide association study for fatty acids profile in Santa Inês sheep |
title_full_unstemmed | Estimates of genomic heritability and genome-wide association study for fatty acids profile in Santa Inês sheep |
title_short | Estimates of genomic heritability and genome-wide association study for fatty acids profile in Santa Inês sheep |
title_sort | estimates of genomic heritability and genome-wide association study for fatty acids profile in santa inês sheep |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5963081/ https://www.ncbi.nlm.nih.gov/pubmed/29783944 http://dx.doi.org/10.1186/s12864-018-4777-8 |
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