Cargando…

Estimates of genomic heritability and genome-wide association study for fatty acids profile in Santa Inês sheep

BACKGROUND: Despite the health concerns and nutritional importance of fatty acids, there is a relative paucity of studies in the literature that report genetic or genomic parameters, especially in the case of sheep populations. To investigate the genetic architecture of fatty acid composition of she...

Descripción completa

Detalles Bibliográficos
Autores principales: Rovadoscki, G. A., Pertile, S. F. N., Alvarenga, A. B., Cesar, A. S. M., Pértille, F., Petrini, J., Franzo, V., Soares, W. V. B., Morota, G., Spangler, M. L., Pinto, L. F. B., Carvalho, G. G. P., Lanna, D. P. D., Coutinho, L. L., Mourão, G. B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5963081/
https://www.ncbi.nlm.nih.gov/pubmed/29783944
http://dx.doi.org/10.1186/s12864-018-4777-8
_version_ 1783324985858719744
author Rovadoscki, G. A.
Pertile, S. F. N.
Alvarenga, A. B.
Cesar, A. S. M.
Pértille, F.
Petrini, J.
Franzo, V.
Soares, W. V. B.
Morota, G.
Spangler, M. L.
Pinto, L. F. B.
Carvalho, G. G. P.
Lanna, D. P. D.
Coutinho, L. L.
Mourão, G. B.
author_facet Rovadoscki, G. A.
Pertile, S. F. N.
Alvarenga, A. B.
Cesar, A. S. M.
Pértille, F.
Petrini, J.
Franzo, V.
Soares, W. V. B.
Morota, G.
Spangler, M. L.
Pinto, L. F. B.
Carvalho, G. G. P.
Lanna, D. P. D.
Coutinho, L. L.
Mourão, G. B.
author_sort Rovadoscki, G. A.
collection PubMed
description BACKGROUND: Despite the health concerns and nutritional importance of fatty acids, there is a relative paucity of studies in the literature that report genetic or genomic parameters, especially in the case of sheep populations. To investigate the genetic architecture of fatty acid composition of sheep, we conducted genome-wide association studies (GWAS) and estimated genomic heritabilities for fatty acid profile in Longissimus dorsi muscle of 216 male sheep. RESULTS: Genomic heritability estimates for fatty acid content ranged from 0.25 to 0.46, indicating that substantial genetic variation exists for the evaluated traits. Therefore, it is possible to alter fatty acid profiles through selection. Twenty-seven genomic regions of 10 adjacent SNPs associated with fatty acids composition were identified on chromosomes 1, 2, 3, 5, 8, 12, 14, 15, 16, 17, and 18, each explaining ≥0.30% of the additive genetic variance. Twenty-three genes supporting the understanding of genetic mechanisms of fat composition in sheep were identified in these regions, such as DGAT2, TRHDE, TPH2, ME1, C6, C7, UBE3D, PARP14, and MRPS30. CONCLUSIONS: Estimates of genomic heritabilities and elucidating important genomic regions can contribute to a better understanding of the genetic control of fatty acid deposition and improve the selection strategies to enhance meat quality and health attributes.
format Online
Article
Text
id pubmed-5963081
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-59630812018-06-25 Estimates of genomic heritability and genome-wide association study for fatty acids profile in Santa Inês sheep Rovadoscki, G. A. Pertile, S. F. N. Alvarenga, A. B. Cesar, A. S. M. Pértille, F. Petrini, J. Franzo, V. Soares, W. V. B. Morota, G. Spangler, M. L. Pinto, L. F. B. Carvalho, G. G. P. Lanna, D. P. D. Coutinho, L. L. Mourão, G. B. BMC Genomics Research Article BACKGROUND: Despite the health concerns and nutritional importance of fatty acids, there is a relative paucity of studies in the literature that report genetic or genomic parameters, especially in the case of sheep populations. To investigate the genetic architecture of fatty acid composition of sheep, we conducted genome-wide association studies (GWAS) and estimated genomic heritabilities for fatty acid profile in Longissimus dorsi muscle of 216 male sheep. RESULTS: Genomic heritability estimates for fatty acid content ranged from 0.25 to 0.46, indicating that substantial genetic variation exists for the evaluated traits. Therefore, it is possible to alter fatty acid profiles through selection. Twenty-seven genomic regions of 10 adjacent SNPs associated with fatty acids composition were identified on chromosomes 1, 2, 3, 5, 8, 12, 14, 15, 16, 17, and 18, each explaining ≥0.30% of the additive genetic variance. Twenty-three genes supporting the understanding of genetic mechanisms of fat composition in sheep were identified in these regions, such as DGAT2, TRHDE, TPH2, ME1, C6, C7, UBE3D, PARP14, and MRPS30. CONCLUSIONS: Estimates of genomic heritabilities and elucidating important genomic regions can contribute to a better understanding of the genetic control of fatty acid deposition and improve the selection strategies to enhance meat quality and health attributes. BioMed Central 2018-05-21 /pmc/articles/PMC5963081/ /pubmed/29783944 http://dx.doi.org/10.1186/s12864-018-4777-8 Text en © The Author(s). 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Rovadoscki, G. A.
Pertile, S. F. N.
Alvarenga, A. B.
Cesar, A. S. M.
Pértille, F.
Petrini, J.
Franzo, V.
Soares, W. V. B.
Morota, G.
Spangler, M. L.
Pinto, L. F. B.
Carvalho, G. G. P.
Lanna, D. P. D.
Coutinho, L. L.
Mourão, G. B.
Estimates of genomic heritability and genome-wide association study for fatty acids profile in Santa Inês sheep
title Estimates of genomic heritability and genome-wide association study for fatty acids profile in Santa Inês sheep
title_full Estimates of genomic heritability and genome-wide association study for fatty acids profile in Santa Inês sheep
title_fullStr Estimates of genomic heritability and genome-wide association study for fatty acids profile in Santa Inês sheep
title_full_unstemmed Estimates of genomic heritability and genome-wide association study for fatty acids profile in Santa Inês sheep
title_short Estimates of genomic heritability and genome-wide association study for fatty acids profile in Santa Inês sheep
title_sort estimates of genomic heritability and genome-wide association study for fatty acids profile in santa inês sheep
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5963081/
https://www.ncbi.nlm.nih.gov/pubmed/29783944
http://dx.doi.org/10.1186/s12864-018-4777-8
work_keys_str_mv AT rovadosckiga estimatesofgenomicheritabilityandgenomewideassociationstudyforfattyacidsprofileinsantainessheep
AT pertilesfn estimatesofgenomicheritabilityandgenomewideassociationstudyforfattyacidsprofileinsantainessheep
AT alvarengaab estimatesofgenomicheritabilityandgenomewideassociationstudyforfattyacidsprofileinsantainessheep
AT cesarasm estimatesofgenomicheritabilityandgenomewideassociationstudyforfattyacidsprofileinsantainessheep
AT pertillef estimatesofgenomicheritabilityandgenomewideassociationstudyforfattyacidsprofileinsantainessheep
AT petrinij estimatesofgenomicheritabilityandgenomewideassociationstudyforfattyacidsprofileinsantainessheep
AT franzov estimatesofgenomicheritabilityandgenomewideassociationstudyforfattyacidsprofileinsantainessheep
AT soareswvb estimatesofgenomicheritabilityandgenomewideassociationstudyforfattyacidsprofileinsantainessheep
AT morotag estimatesofgenomicheritabilityandgenomewideassociationstudyforfattyacidsprofileinsantainessheep
AT spanglerml estimatesofgenomicheritabilityandgenomewideassociationstudyforfattyacidsprofileinsantainessheep
AT pintolfb estimatesofgenomicheritabilityandgenomewideassociationstudyforfattyacidsprofileinsantainessheep
AT carvalhoggp estimatesofgenomicheritabilityandgenomewideassociationstudyforfattyacidsprofileinsantainessheep
AT lannadpd estimatesofgenomicheritabilityandgenomewideassociationstudyforfattyacidsprofileinsantainessheep
AT coutinholl estimatesofgenomicheritabilityandgenomewideassociationstudyforfattyacidsprofileinsantainessheep
AT mouraogb estimatesofgenomicheritabilityandgenomewideassociationstudyforfattyacidsprofileinsantainessheep