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ProtVista: visualization of protein sequence annotations

Summary: ProtVista is a comprehensive visualization tool for the graphical representation of protein sequence features in the UniProt Knowledgebase, experimental proteomics and variation public datasets. The complexity and relationships in this wealth of data pose a challenge in interpretation. Inte...

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Detalles Bibliográficos
Autores principales: Watkins, Xavier, Garcia, Leyla J., Pundir, Sangya, Martin, Maria J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5963392/
https://www.ncbi.nlm.nih.gov/pubmed/28334231
http://dx.doi.org/10.1093/bioinformatics/btx120
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author Watkins, Xavier
Garcia, Leyla J.
Pundir, Sangya
Martin, Maria J.
author_facet Watkins, Xavier
Garcia, Leyla J.
Pundir, Sangya
Martin, Maria J.
author_sort Watkins, Xavier
collection PubMed
description Summary: ProtVista is a comprehensive visualization tool for the graphical representation of protein sequence features in the UniProt Knowledgebase, experimental proteomics and variation public datasets. The complexity and relationships in this wealth of data pose a challenge in interpretation. Integrative visualization approaches such as provided by ProtVista are thus essential for researchers to understand the data and, for instance, discover patterns affecting function and disease associations. Availability and Implementation: ProtVista is a JavaScript component released as an open source project under the Apache 2 License. Documentation and source code are available at http://ebi-uniprot.github.io/ProtVista/. Contact: martin@ebi.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online.
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spelling pubmed-59633922018-06-04 ProtVista: visualization of protein sequence annotations Watkins, Xavier Garcia, Leyla J. Pundir, Sangya Martin, Maria J. Bioinformatics Applications Notes Summary: ProtVista is a comprehensive visualization tool for the graphical representation of protein sequence features in the UniProt Knowledgebase, experimental proteomics and variation public datasets. The complexity and relationships in this wealth of data pose a challenge in interpretation. Integrative visualization approaches such as provided by ProtVista are thus essential for researchers to understand the data and, for instance, discover patterns affecting function and disease associations. Availability and Implementation: ProtVista is a JavaScript component released as an open source project under the Apache 2 License. Documentation and source code are available at http://ebi-uniprot.github.io/ProtVista/. Contact: martin@ebi.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online. Oxford University Press 2017-07-01 2017-03-07 /pmc/articles/PMC5963392/ /pubmed/28334231 http://dx.doi.org/10.1093/bioinformatics/btx120 Text en © The Author 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Watkins, Xavier
Garcia, Leyla J.
Pundir, Sangya
Martin, Maria J.
ProtVista: visualization of protein sequence annotations
title ProtVista: visualization of protein sequence annotations
title_full ProtVista: visualization of protein sequence annotations
title_fullStr ProtVista: visualization of protein sequence annotations
title_full_unstemmed ProtVista: visualization of protein sequence annotations
title_short ProtVista: visualization of protein sequence annotations
title_sort protvista: visualization of protein sequence annotations
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5963392/
https://www.ncbi.nlm.nih.gov/pubmed/28334231
http://dx.doi.org/10.1093/bioinformatics/btx120
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