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Species identification and connectivity of marine amphipods in Canada’s three oceans

Monitoring the distribution of marine biodiversity is a crucial step to better assess the impacts of global changes. Arctic marine fauna is dominated by amphipods in terms of abundance and biomass. These peracarids are an important marine order of crustaceans but the number of species found in the d...

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Detalles Bibliográficos
Autores principales: Tempestini, Astrid, Rysgaard, Søren, Dufresne, France
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5965885/
https://www.ncbi.nlm.nih.gov/pubmed/29791459
http://dx.doi.org/10.1371/journal.pone.0197174
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author Tempestini, Astrid
Rysgaard, Søren
Dufresne, France
author_facet Tempestini, Astrid
Rysgaard, Søren
Dufresne, France
author_sort Tempestini, Astrid
collection PubMed
description Monitoring the distribution of marine biodiversity is a crucial step to better assess the impacts of global changes. Arctic marine fauna is dominated by amphipods in terms of abundance and biomass. These peracarids are an important marine order of crustaceans but the number of species found in the different Canadian oceans is currently unknown. Furthermore, most species are difficult to identify due to poor taxonomic descriptions and morphological convergence. The aim of this study was to assess the species diversity of marine amphipods in the three Canadian oceans using DNA barcoding. To do so, we produced a database of DNA barcodes of amphipods from the three Canadian Oceans publicly available from the BOLD website to which we added 310 new sequences from the Canadian Arctic Archipelago. We first delimited amphipod species based on barcode gap detection techniques and tree based method (bPTP) and then compared the composition of amphipods among the three oceans in order to assess the influence of past transarctic exchanges on Arctic diversity. Our analysis of 2309 sequences which represent more than 250 provisional species revealed a high connectivity between the Atlantic and Arctic Oceans. Our results also suggest that a single threshold to delimitate species is not suitable for amphipods. This study highlights the challenges involved in species delimitation and the need to obtain complete barcoding inventories in marine invertebrates.
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spelling pubmed-59658852018-06-02 Species identification and connectivity of marine amphipods in Canada’s three oceans Tempestini, Astrid Rysgaard, Søren Dufresne, France PLoS One Research Article Monitoring the distribution of marine biodiversity is a crucial step to better assess the impacts of global changes. Arctic marine fauna is dominated by amphipods in terms of abundance and biomass. These peracarids are an important marine order of crustaceans but the number of species found in the different Canadian oceans is currently unknown. Furthermore, most species are difficult to identify due to poor taxonomic descriptions and morphological convergence. The aim of this study was to assess the species diversity of marine amphipods in the three Canadian oceans using DNA barcoding. To do so, we produced a database of DNA barcodes of amphipods from the three Canadian Oceans publicly available from the BOLD website to which we added 310 new sequences from the Canadian Arctic Archipelago. We first delimited amphipod species based on barcode gap detection techniques and tree based method (bPTP) and then compared the composition of amphipods among the three oceans in order to assess the influence of past transarctic exchanges on Arctic diversity. Our analysis of 2309 sequences which represent more than 250 provisional species revealed a high connectivity between the Atlantic and Arctic Oceans. Our results also suggest that a single threshold to delimitate species is not suitable for amphipods. This study highlights the challenges involved in species delimitation and the need to obtain complete barcoding inventories in marine invertebrates. Public Library of Science 2018-05-23 /pmc/articles/PMC5965885/ /pubmed/29791459 http://dx.doi.org/10.1371/journal.pone.0197174 Text en © 2018 Tempestini et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Tempestini, Astrid
Rysgaard, Søren
Dufresne, France
Species identification and connectivity of marine amphipods in Canada’s three oceans
title Species identification and connectivity of marine amphipods in Canada’s three oceans
title_full Species identification and connectivity of marine amphipods in Canada’s three oceans
title_fullStr Species identification and connectivity of marine amphipods in Canada’s three oceans
title_full_unstemmed Species identification and connectivity of marine amphipods in Canada’s three oceans
title_short Species identification and connectivity of marine amphipods in Canada’s three oceans
title_sort species identification and connectivity of marine amphipods in canada’s three oceans
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5965885/
https://www.ncbi.nlm.nih.gov/pubmed/29791459
http://dx.doi.org/10.1371/journal.pone.0197174
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