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Three-lncRNA signature is a potential prognostic biomarker for pancreatic adenocarcinoma
Pancreatic adenocarcinoma (PAAD) is a highly aggressive and metastatic cancer characterized by poor survival rates. Long non-coding RNAs (lncRNAs) play important roles in various biological processes, including cancer and PAAD. To identify the specific lncRNAs associated with PAAD and analyze their...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals LLC
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5966255/ https://www.ncbi.nlm.nih.gov/pubmed/29849937 http://dx.doi.org/10.18632/oncotarget.24443 |
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author | Shi, Xiuhui Zhao, Yan He, Ruizhi Zhou, Min Pan, Shutao Yu, Shuo Xie, Yu Li, Xu Wang, Min Guo, Xingjun Qin, Renyi |
author_facet | Shi, Xiuhui Zhao, Yan He, Ruizhi Zhou, Min Pan, Shutao Yu, Shuo Xie, Yu Li, Xu Wang, Min Guo, Xingjun Qin, Renyi |
author_sort | Shi, Xiuhui |
collection | PubMed |
description | Pancreatic adenocarcinoma (PAAD) is a highly aggressive and metastatic cancer characterized by poor survival rates. Long non-coding RNAs (lncRNAs) play important roles in various biological processes, including cancer and PAAD. To identify the specific lncRNAs associated with PAAD and analyze their function, we constructed a global triple network based on the competitive endogenous RNA (ceRNA) theory and RNA-seq data from The Cancer Genome Atlas. Using 182 PAAD cases, we established a lncRNA–miRNA–mRNA co-expression network, which was composed of 43 lncRNA nodes, 253 mRNA nodes, 11 miRNA nodes, and 475 edges. Six lncRNAs in the ceRNA network were closely related to overall survival, and a three-lncRNA signature predicted survival of PAAD patients. Protein–protein interaction network data revealed that five genes were associated with overall survival. These results provide novel insight into the function of a lncRNA-associated ceRNA network in the pathogenesis of PAAD, and indicate that the identified three-lncRNA signature may serve as an independent prognostic marker in PAAD. |
format | Online Article Text |
id | pubmed-5966255 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Impact Journals LLC |
record_format | MEDLINE/PubMed |
spelling | pubmed-59662552018-05-30 Three-lncRNA signature is a potential prognostic biomarker for pancreatic adenocarcinoma Shi, Xiuhui Zhao, Yan He, Ruizhi Zhou, Min Pan, Shutao Yu, Shuo Xie, Yu Li, Xu Wang, Min Guo, Xingjun Qin, Renyi Oncotarget Research Paper Pancreatic adenocarcinoma (PAAD) is a highly aggressive and metastatic cancer characterized by poor survival rates. Long non-coding RNAs (lncRNAs) play important roles in various biological processes, including cancer and PAAD. To identify the specific lncRNAs associated with PAAD and analyze their function, we constructed a global triple network based on the competitive endogenous RNA (ceRNA) theory and RNA-seq data from The Cancer Genome Atlas. Using 182 PAAD cases, we established a lncRNA–miRNA–mRNA co-expression network, which was composed of 43 lncRNA nodes, 253 mRNA nodes, 11 miRNA nodes, and 475 edges. Six lncRNAs in the ceRNA network were closely related to overall survival, and a three-lncRNA signature predicted survival of PAAD patients. Protein–protein interaction network data revealed that five genes were associated with overall survival. These results provide novel insight into the function of a lncRNA-associated ceRNA network in the pathogenesis of PAAD, and indicate that the identified three-lncRNA signature may serve as an independent prognostic marker in PAAD. Impact Journals LLC 2018-02-08 /pmc/articles/PMC5966255/ /pubmed/29849937 http://dx.doi.org/10.18632/oncotarget.24443 Text en Copyright: © 2018 Shi et al. http://creativecommons.org/licenses/by/3.0/ This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/) (CC-BY), which permits unrestricted use and redistribution provided that the original author and source are credited. |
spellingShingle | Research Paper Shi, Xiuhui Zhao, Yan He, Ruizhi Zhou, Min Pan, Shutao Yu, Shuo Xie, Yu Li, Xu Wang, Min Guo, Xingjun Qin, Renyi Three-lncRNA signature is a potential prognostic biomarker for pancreatic adenocarcinoma |
title | Three-lncRNA signature is a potential prognostic biomarker for pancreatic adenocarcinoma |
title_full | Three-lncRNA signature is a potential prognostic biomarker for pancreatic adenocarcinoma |
title_fullStr | Three-lncRNA signature is a potential prognostic biomarker for pancreatic adenocarcinoma |
title_full_unstemmed | Three-lncRNA signature is a potential prognostic biomarker for pancreatic adenocarcinoma |
title_short | Three-lncRNA signature is a potential prognostic biomarker for pancreatic adenocarcinoma |
title_sort | three-lncrna signature is a potential prognostic biomarker for pancreatic adenocarcinoma |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5966255/ https://www.ncbi.nlm.nih.gov/pubmed/29849937 http://dx.doi.org/10.18632/oncotarget.24443 |
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