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Three-lncRNA signature is a potential prognostic biomarker for pancreatic adenocarcinoma

Pancreatic adenocarcinoma (PAAD) is a highly aggressive and metastatic cancer characterized by poor survival rates. Long non-coding RNAs (lncRNAs) play important roles in various biological processes, including cancer and PAAD. To identify the specific lncRNAs associated with PAAD and analyze their...

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Autores principales: Shi, Xiuhui, Zhao, Yan, He, Ruizhi, Zhou, Min, Pan, Shutao, Yu, Shuo, Xie, Yu, Li, Xu, Wang, Min, Guo, Xingjun, Qin, Renyi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals LLC 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5966255/
https://www.ncbi.nlm.nih.gov/pubmed/29849937
http://dx.doi.org/10.18632/oncotarget.24443
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author Shi, Xiuhui
Zhao, Yan
He, Ruizhi
Zhou, Min
Pan, Shutao
Yu, Shuo
Xie, Yu
Li, Xu
Wang, Min
Guo, Xingjun
Qin, Renyi
author_facet Shi, Xiuhui
Zhao, Yan
He, Ruizhi
Zhou, Min
Pan, Shutao
Yu, Shuo
Xie, Yu
Li, Xu
Wang, Min
Guo, Xingjun
Qin, Renyi
author_sort Shi, Xiuhui
collection PubMed
description Pancreatic adenocarcinoma (PAAD) is a highly aggressive and metastatic cancer characterized by poor survival rates. Long non-coding RNAs (lncRNAs) play important roles in various biological processes, including cancer and PAAD. To identify the specific lncRNAs associated with PAAD and analyze their function, we constructed a global triple network based on the competitive endogenous RNA (ceRNA) theory and RNA-seq data from The Cancer Genome Atlas. Using 182 PAAD cases, we established a lncRNA–miRNA–mRNA co-expression network, which was composed of 43 lncRNA nodes, 253 mRNA nodes, 11 miRNA nodes, and 475 edges. Six lncRNAs in the ceRNA network were closely related to overall survival, and a three-lncRNA signature predicted survival of PAAD patients. Protein–protein interaction network data revealed that five genes were associated with overall survival. These results provide novel insight into the function of a lncRNA-associated ceRNA network in the pathogenesis of PAAD, and indicate that the identified three-lncRNA signature may serve as an independent prognostic marker in PAAD.
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spelling pubmed-59662552018-05-30 Three-lncRNA signature is a potential prognostic biomarker for pancreatic adenocarcinoma Shi, Xiuhui Zhao, Yan He, Ruizhi Zhou, Min Pan, Shutao Yu, Shuo Xie, Yu Li, Xu Wang, Min Guo, Xingjun Qin, Renyi Oncotarget Research Paper Pancreatic adenocarcinoma (PAAD) is a highly aggressive and metastatic cancer characterized by poor survival rates. Long non-coding RNAs (lncRNAs) play important roles in various biological processes, including cancer and PAAD. To identify the specific lncRNAs associated with PAAD and analyze their function, we constructed a global triple network based on the competitive endogenous RNA (ceRNA) theory and RNA-seq data from The Cancer Genome Atlas. Using 182 PAAD cases, we established a lncRNA–miRNA–mRNA co-expression network, which was composed of 43 lncRNA nodes, 253 mRNA nodes, 11 miRNA nodes, and 475 edges. Six lncRNAs in the ceRNA network were closely related to overall survival, and a three-lncRNA signature predicted survival of PAAD patients. Protein–protein interaction network data revealed that five genes were associated with overall survival. These results provide novel insight into the function of a lncRNA-associated ceRNA network in the pathogenesis of PAAD, and indicate that the identified three-lncRNA signature may serve as an independent prognostic marker in PAAD. Impact Journals LLC 2018-02-08 /pmc/articles/PMC5966255/ /pubmed/29849937 http://dx.doi.org/10.18632/oncotarget.24443 Text en Copyright: © 2018 Shi et al. http://creativecommons.org/licenses/by/3.0/ This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/) (CC-BY), which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Research Paper
Shi, Xiuhui
Zhao, Yan
He, Ruizhi
Zhou, Min
Pan, Shutao
Yu, Shuo
Xie, Yu
Li, Xu
Wang, Min
Guo, Xingjun
Qin, Renyi
Three-lncRNA signature is a potential prognostic biomarker for pancreatic adenocarcinoma
title Three-lncRNA signature is a potential prognostic biomarker for pancreatic adenocarcinoma
title_full Three-lncRNA signature is a potential prognostic biomarker for pancreatic adenocarcinoma
title_fullStr Three-lncRNA signature is a potential prognostic biomarker for pancreatic adenocarcinoma
title_full_unstemmed Three-lncRNA signature is a potential prognostic biomarker for pancreatic adenocarcinoma
title_short Three-lncRNA signature is a potential prognostic biomarker for pancreatic adenocarcinoma
title_sort three-lncrna signature is a potential prognostic biomarker for pancreatic adenocarcinoma
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5966255/
https://www.ncbi.nlm.nih.gov/pubmed/29849937
http://dx.doi.org/10.18632/oncotarget.24443
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