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Causality Patterns for Detecting Adverse Drug Reactions From Social Media: Text Mining Approach

BACKGROUND: Detecting adverse drug reactions (ADRs) is an important task that has direct implications for the use of that drug. If we can detect previously unknown ADRs as quickly as possible, then this information can be provided to the regulators, pharmaceutical companies, and health care organiza...

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Autores principales: Bollegala, Danushka, Maskell, Simon, Sloane, Richard, Hajne, Joanna, Pirmohamed, Munir
Formato: Online Artículo Texto
Lenguaje:English
Publicado: JMIR Publications 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5966656/
https://www.ncbi.nlm.nih.gov/pubmed/29743155
http://dx.doi.org/10.2196/publichealth.8214
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author Bollegala, Danushka
Maskell, Simon
Sloane, Richard
Hajne, Joanna
Pirmohamed, Munir
author_facet Bollegala, Danushka
Maskell, Simon
Sloane, Richard
Hajne, Joanna
Pirmohamed, Munir
author_sort Bollegala, Danushka
collection PubMed
description BACKGROUND: Detecting adverse drug reactions (ADRs) is an important task that has direct implications for the use of that drug. If we can detect previously unknown ADRs as quickly as possible, then this information can be provided to the regulators, pharmaceutical companies, and health care organizations, thereby potentially reducing drug-related morbidity and saving lives of many patients. A promising approach for detecting ADRs is to use social media platforms such as Twitter and Facebook. A high level of correlation between a drug name and an event may be an indication of a potential adverse reaction associated with that drug. Although numerous association measures have been proposed by the signal detection community for identifying ADRs, these measures are limited in that they detect correlations but often ignore causality. OBJECTIVE: This study aimed to propose a causality measure that can detect an adverse reaction that is caused by a drug rather than merely being a correlated signal. METHODS: To the best of our knowledge, this was the first causality-sensitive approach for detecting ADRs from social media. Specifically, the relationship between a drug and an event was represented using a set of automatically extracted lexical patterns. We then learned the weights for the extracted lexical patterns that indicate their reliability for expressing an adverse reaction of a given drug. RESULTS: Our proposed method obtains an ADR detection accuracy of 74% on a large-scale manually annotated dataset of tweets, covering a standard set of drugs and adverse reactions. CONCLUSIONS: By using lexical patterns, we can accurately detect the causality between drugs and adverse reaction–related events.
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spelling pubmed-59666562018-05-30 Causality Patterns for Detecting Adverse Drug Reactions From Social Media: Text Mining Approach Bollegala, Danushka Maskell, Simon Sloane, Richard Hajne, Joanna Pirmohamed, Munir JMIR Public Health Surveill Proposal BACKGROUND: Detecting adverse drug reactions (ADRs) is an important task that has direct implications for the use of that drug. If we can detect previously unknown ADRs as quickly as possible, then this information can be provided to the regulators, pharmaceutical companies, and health care organizations, thereby potentially reducing drug-related morbidity and saving lives of many patients. A promising approach for detecting ADRs is to use social media platforms such as Twitter and Facebook. A high level of correlation between a drug name and an event may be an indication of a potential adverse reaction associated with that drug. Although numerous association measures have been proposed by the signal detection community for identifying ADRs, these measures are limited in that they detect correlations but often ignore causality. OBJECTIVE: This study aimed to propose a causality measure that can detect an adverse reaction that is caused by a drug rather than merely being a correlated signal. METHODS: To the best of our knowledge, this was the first causality-sensitive approach for detecting ADRs from social media. Specifically, the relationship between a drug and an event was represented using a set of automatically extracted lexical patterns. We then learned the weights for the extracted lexical patterns that indicate their reliability for expressing an adverse reaction of a given drug. RESULTS: Our proposed method obtains an ADR detection accuracy of 74% on a large-scale manually annotated dataset of tweets, covering a standard set of drugs and adverse reactions. CONCLUSIONS: By using lexical patterns, we can accurately detect the causality between drugs and adverse reaction–related events. JMIR Publications 2018-05-09 /pmc/articles/PMC5966656/ /pubmed/29743155 http://dx.doi.org/10.2196/publichealth.8214 Text en ©Danushka Bollegala, Simon Maskell, Richard Sloane, Joanna Hajne, Munir Pirmohamed. Originally published in JMIR Public Health and Surveillance (http://publichealth.jmir.org), 09.05.2018. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in JMIR Public Health and Surveillance, is properly cited. The complete bibliographic information, a link to the original publication on http://publichealth.jmir.org, as well as this copyright and license information must be included.
spellingShingle Proposal
Bollegala, Danushka
Maskell, Simon
Sloane, Richard
Hajne, Joanna
Pirmohamed, Munir
Causality Patterns for Detecting Adverse Drug Reactions From Social Media: Text Mining Approach
title Causality Patterns for Detecting Adverse Drug Reactions From Social Media: Text Mining Approach
title_full Causality Patterns for Detecting Adverse Drug Reactions From Social Media: Text Mining Approach
title_fullStr Causality Patterns for Detecting Adverse Drug Reactions From Social Media: Text Mining Approach
title_full_unstemmed Causality Patterns for Detecting Adverse Drug Reactions From Social Media: Text Mining Approach
title_short Causality Patterns for Detecting Adverse Drug Reactions From Social Media: Text Mining Approach
title_sort causality patterns for detecting adverse drug reactions from social media: text mining approach
topic Proposal
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5966656/
https://www.ncbi.nlm.nih.gov/pubmed/29743155
http://dx.doi.org/10.2196/publichealth.8214
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