MitoFish and MiFish Pipeline: A Mitochondrial Genome Database of Fish with an Analysis Pipeline for Environmental DNA Metabarcoding

Fish mitochondrial genome (mitogenome) data form a fundamental basis for revealing vertebrate evolution and hydrosphere ecology. Here, we report recent functional updates of MitoFish, which is a database of fish mitogenomes with a precise annotation pipeline MitoAnnotator. Most importantly, we descr...

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Detalles Bibliográficos
Autores principales: Sato, Yukuto, Miya, Masaki, Fukunaga, Tsukasa, Sado, Tetsuya, Iwasaki, Wataru
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Resources
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5967551/
https://www.ncbi.nlm.nih.gov/pubmed/29668970
http://dx.doi.org/10.1093/molbev/msy074
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author Sato, Yukuto
Miya, Masaki
Fukunaga, Tsukasa
Sado, Tetsuya
Iwasaki, Wataru
author_facet Sato, Yukuto
Miya, Masaki
Fukunaga, Tsukasa
Sado, Tetsuya
Iwasaki, Wataru
author_sort Sato, Yukuto
collection PubMed
description Fish mitochondrial genome (mitogenome) data form a fundamental basis for revealing vertebrate evolution and hydrosphere ecology. Here, we report recent functional updates of MitoFish, which is a database of fish mitogenomes with a precise annotation pipeline MitoAnnotator. Most importantly, we describe implementation of MiFish pipeline for metabarcoding analysis of fish mitochondrial environmental DNA, which is a fast-emerging and powerful technology in fish studies. MitoFish, MitoAnnotator, and MiFish pipeline constitute a key platform for studies of fish evolution, ecology, and conservation, and are freely available at http://mitofish.aori.u-tokyo.ac.jp/ (last accessed April 7th, 2018).
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spelling pubmed-59675512018-06-04 MitoFish and MiFish Pipeline: A Mitochondrial Genome Database of Fish with an Analysis Pipeline for Environmental DNA Metabarcoding Sato, Yukuto Miya, Masaki Fukunaga, Tsukasa Sado, Tetsuya Iwasaki, Wataru Mol Biol Evol Resources Fish mitochondrial genome (mitogenome) data form a fundamental basis for revealing vertebrate evolution and hydrosphere ecology. Here, we report recent functional updates of MitoFish, which is a database of fish mitogenomes with a precise annotation pipeline MitoAnnotator. Most importantly, we describe implementation of MiFish pipeline for metabarcoding analysis of fish mitochondrial environmental DNA, which is a fast-emerging and powerful technology in fish studies. MitoFish, MitoAnnotator, and MiFish pipeline constitute a key platform for studies of fish evolution, ecology, and conservation, and are freely available at http://mitofish.aori.u-tokyo.ac.jp/ (last accessed April 7th, 2018). Oxford University Press 2018-06 2018-04-14 /pmc/articles/PMC5967551/ /pubmed/29668970 http://dx.doi.org/10.1093/molbev/msy074 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Resources
Sato, Yukuto
Miya, Masaki
Fukunaga, Tsukasa
Sado, Tetsuya
Iwasaki, Wataru
MitoFish and MiFish Pipeline: A Mitochondrial Genome Database of Fish with an Analysis Pipeline for Environmental DNA Metabarcoding
title MitoFish and MiFish Pipeline: A Mitochondrial Genome Database of Fish with an Analysis Pipeline for Environmental DNA Metabarcoding
title_full MitoFish and MiFish Pipeline: A Mitochondrial Genome Database of Fish with an Analysis Pipeline for Environmental DNA Metabarcoding
title_fullStr MitoFish and MiFish Pipeline: A Mitochondrial Genome Database of Fish with an Analysis Pipeline for Environmental DNA Metabarcoding
title_full_unstemmed MitoFish and MiFish Pipeline: A Mitochondrial Genome Database of Fish with an Analysis Pipeline for Environmental DNA Metabarcoding
title_short MitoFish and MiFish Pipeline: A Mitochondrial Genome Database of Fish with an Analysis Pipeline for Environmental DNA Metabarcoding
title_sort mitofish and mifish pipeline: a mitochondrial genome database of fish with an analysis pipeline for environmental dna metabarcoding
topic Resources
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5967551/
https://www.ncbi.nlm.nih.gov/pubmed/29668970
http://dx.doi.org/10.1093/molbev/msy074
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