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A DNA barcode library for ground beetles of Germany: the genus Amara Bonelli, 1810 (Insecta, Coleoptera, Carabidae)

Abstract. The genus Amara Bonelli, 1810 is a very speciose and taxonomically difficult genus of the Carabidae. The identification of many of the species is accomplished with considerable difficulty, in particular for females and immature stages. In this study the effectiveness of DNA barcoding, the...

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Autores principales: Raupach, Michael J., Hannig, Karsten, Moriniére, Jérôme, Hendrich, Lars
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5968077/
https://www.ncbi.nlm.nih.gov/pubmed/29853775
http://dx.doi.org/10.3897/zookeys.759.24129
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author Raupach, Michael J.
Hannig, Karsten
Moriniére, Jérôme
Hendrich, Lars
author_facet Raupach, Michael J.
Hannig, Karsten
Moriniére, Jérôme
Hendrich, Lars
author_sort Raupach, Michael J.
collection PubMed
description Abstract. The genus Amara Bonelli, 1810 is a very speciose and taxonomically difficult genus of the Carabidae. The identification of many of the species is accomplished with considerable difficulty, in particular for females and immature stages. In this study the effectiveness of DNA barcoding, the most popular method for molecular species identification, was examined to discriminate various species of this genus from Central Europe. DNA barcodes from 690 individuals and 47 species were analysed, including sequences from previous studies and more than 350 newly generated DNA barcodes. Our analysis revealed unique BINs for 38 species (81%). Interspecific K2P distances below 2.2% were found for three species pairs and one species trio, including haplotype sharing between Amara alpina/Amara torrida and Amara communis/Amara convexior/Amara makolskii. This study represents another step in generating an extensive reference library of DNA barcodes for carabids, highly valuable bioindicators for characterizing disturbances in various habitats.
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spelling pubmed-59680772018-05-31 A DNA barcode library for ground beetles of Germany: the genus Amara Bonelli, 1810 (Insecta, Coleoptera, Carabidae) Raupach, Michael J. Hannig, Karsten Moriniére, Jérôme Hendrich, Lars Zookeys Research Article Abstract. The genus Amara Bonelli, 1810 is a very speciose and taxonomically difficult genus of the Carabidae. The identification of many of the species is accomplished with considerable difficulty, in particular for females and immature stages. In this study the effectiveness of DNA barcoding, the most popular method for molecular species identification, was examined to discriminate various species of this genus from Central Europe. DNA barcodes from 690 individuals and 47 species were analysed, including sequences from previous studies and more than 350 newly generated DNA barcodes. Our analysis revealed unique BINs for 38 species (81%). Interspecific K2P distances below 2.2% were found for three species pairs and one species trio, including haplotype sharing between Amara alpina/Amara torrida and Amara communis/Amara convexior/Amara makolskii. This study represents another step in generating an extensive reference library of DNA barcodes for carabids, highly valuable bioindicators for characterizing disturbances in various habitats. Pensoft Publishers 2018-05-17 /pmc/articles/PMC5968077/ /pubmed/29853775 http://dx.doi.org/10.3897/zookeys.759.24129 Text en Michael J. Raupach, Karsten Hannig, Jérôme Moriniére, Lars Hendrich http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Raupach, Michael J.
Hannig, Karsten
Moriniére, Jérôme
Hendrich, Lars
A DNA barcode library for ground beetles of Germany: the genus Amara Bonelli, 1810 (Insecta, Coleoptera, Carabidae)
title A DNA barcode library for ground beetles of Germany: the genus Amara Bonelli, 1810 (Insecta, Coleoptera, Carabidae)
title_full A DNA barcode library for ground beetles of Germany: the genus Amara Bonelli, 1810 (Insecta, Coleoptera, Carabidae)
title_fullStr A DNA barcode library for ground beetles of Germany: the genus Amara Bonelli, 1810 (Insecta, Coleoptera, Carabidae)
title_full_unstemmed A DNA barcode library for ground beetles of Germany: the genus Amara Bonelli, 1810 (Insecta, Coleoptera, Carabidae)
title_short A DNA barcode library for ground beetles of Germany: the genus Amara Bonelli, 1810 (Insecta, Coleoptera, Carabidae)
title_sort dna barcode library for ground beetles of germany: the genus amara bonelli, 1810 (insecta, coleoptera, carabidae)
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5968077/
https://www.ncbi.nlm.nih.gov/pubmed/29853775
http://dx.doi.org/10.3897/zookeys.759.24129
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