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Slow Dynamics around a Protein and Its Coupling to Solvent
[Image: see text] Solvent is essential for protein dynamics and function, but its role in regulating the dynamics remains debated. Here, we employ saturation transfer electron spin resonance (ST-ESR) to explore the issue and characterize the dynamics on a longer (from μs to s) time scale than has be...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2018
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5968437/ https://www.ncbi.nlm.nih.gov/pubmed/29806012 http://dx.doi.org/10.1021/acscentsci.8b00139 |
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author | Kuo, Yun-Hsuan Chiang, Yun-Wei |
author_facet | Kuo, Yun-Hsuan Chiang, Yun-Wei |
author_sort | Kuo, Yun-Hsuan |
collection | PubMed |
description | [Image: see text] Solvent is essential for protein dynamics and function, but its role in regulating the dynamics remains debated. Here, we employ saturation transfer electron spin resonance (ST-ESR) to explore the issue and characterize the dynamics on a longer (from μs to s) time scale than has been extensively studied. We first demonstrate the reliability of ST-ESR by showing that the dynamical changeovers revealed in the spectra agree to liquid–liquid transition (LLT) in the state diagram of the glycerol/water system. Then, we utilize ST-ESR with four different probes to systematically map out the variation in local (site-specific) dynamics around a protein surface at subfreezing temperatures (180–240 K) in 10 mol % glycerol/water mixtures. At highly exposed sites, protein and solvent dynamics are coupled, whereas they deviate from each other when temperature is greater than LLT temperature (∼190 K) of the solvent. At less exposed sites, protein however exhibits a dynamic, which is distinct from the bulk solvent, throughout the temperature range studied. Dominant dynamic components are thus revealed, showing that (from low to high temperatures) the overall structural fluctuation, rotamer dynamics, and internal side-chain dynamics, in turn, dominate the temperature dependence of spin-label motions. The structural fluctuation component is relatively slow, collective, and independent of protein structural segments, which is thus inferred to a fundamental dynamic component intrinsic to protein. This study corroborates that bulk solvent plasticizes protein and facilitates rather than slaves protein dynamics. |
format | Online Article Text |
id | pubmed-5968437 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-59684372018-05-27 Slow Dynamics around a Protein and Its Coupling to Solvent Kuo, Yun-Hsuan Chiang, Yun-Wei ACS Cent Sci [Image: see text] Solvent is essential for protein dynamics and function, but its role in regulating the dynamics remains debated. Here, we employ saturation transfer electron spin resonance (ST-ESR) to explore the issue and characterize the dynamics on a longer (from μs to s) time scale than has been extensively studied. We first demonstrate the reliability of ST-ESR by showing that the dynamical changeovers revealed in the spectra agree to liquid–liquid transition (LLT) in the state diagram of the glycerol/water system. Then, we utilize ST-ESR with four different probes to systematically map out the variation in local (site-specific) dynamics around a protein surface at subfreezing temperatures (180–240 K) in 10 mol % glycerol/water mixtures. At highly exposed sites, protein and solvent dynamics are coupled, whereas they deviate from each other when temperature is greater than LLT temperature (∼190 K) of the solvent. At less exposed sites, protein however exhibits a dynamic, which is distinct from the bulk solvent, throughout the temperature range studied. Dominant dynamic components are thus revealed, showing that (from low to high temperatures) the overall structural fluctuation, rotamer dynamics, and internal side-chain dynamics, in turn, dominate the temperature dependence of spin-label motions. The structural fluctuation component is relatively slow, collective, and independent of protein structural segments, which is thus inferred to a fundamental dynamic component intrinsic to protein. This study corroborates that bulk solvent plasticizes protein and facilitates rather than slaves protein dynamics. American Chemical Society 2018-05-09 2018-05-23 /pmc/articles/PMC5968437/ /pubmed/29806012 http://dx.doi.org/10.1021/acscentsci.8b00139 Text en Copyright © 2018 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Kuo, Yun-Hsuan Chiang, Yun-Wei Slow Dynamics around a Protein and Its Coupling to Solvent |
title | Slow Dynamics around a Protein and Its Coupling to
Solvent |
title_full | Slow Dynamics around a Protein and Its Coupling to
Solvent |
title_fullStr | Slow Dynamics around a Protein and Its Coupling to
Solvent |
title_full_unstemmed | Slow Dynamics around a Protein and Its Coupling to
Solvent |
title_short | Slow Dynamics around a Protein and Its Coupling to
Solvent |
title_sort | slow dynamics around a protein and its coupling to
solvent |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5968437/ https://www.ncbi.nlm.nih.gov/pubmed/29806012 http://dx.doi.org/10.1021/acscentsci.8b00139 |
work_keys_str_mv | AT kuoyunhsuan slowdynamicsaroundaproteinanditscouplingtosolvent AT chiangyunwei slowdynamicsaroundaproteinanditscouplingtosolvent |