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Adaptive Group-combined P-values Test for Two-sample Location Problem with Applications to Microarray Data

The purpose of this article is to propose a test for two-sample location problem in high-dimensional data. In general highdimensional case, the data dimension can be much larger than the sample size and the underlying distribution may be far from normal. Existing tests requiring explicit relationshi...

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Detalles Bibliográficos
Autores principales: Zhang, Shenghu, Zhu, Jiayan, Li, Zhengbang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5970252/
https://www.ncbi.nlm.nih.gov/pubmed/29802271
http://dx.doi.org/10.1038/s41598-018-26409-1
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author Zhang, Shenghu
Zhu, Jiayan
Li, Zhengbang
author_facet Zhang, Shenghu
Zhu, Jiayan
Li, Zhengbang
author_sort Zhang, Shenghu
collection PubMed
description The purpose of this article is to propose a test for two-sample location problem in high-dimensional data. In general highdimensional case, the data dimension can be much larger than the sample size and the underlying distribution may be far from normal. Existing tests requiring explicit relationship between the data dimension and sample size or designed for multivariate normal distributions may lose power significantly and even yield type I error rates strayed from nominal levels. To overcome this issue, we propose an adaptive group p-values combination test which is robust against both high dimensionality and normality. Simulation studies show that the proposed test controls type I error rates correctly and outperforms some existing tests in most situations. An Ageing Human Brain Microarray data are used to further exemplify the method.
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spelling pubmed-59702522018-05-30 Adaptive Group-combined P-values Test for Two-sample Location Problem with Applications to Microarray Data Zhang, Shenghu Zhu, Jiayan Li, Zhengbang Sci Rep Article The purpose of this article is to propose a test for two-sample location problem in high-dimensional data. In general highdimensional case, the data dimension can be much larger than the sample size and the underlying distribution may be far from normal. Existing tests requiring explicit relationship between the data dimension and sample size or designed for multivariate normal distributions may lose power significantly and even yield type I error rates strayed from nominal levels. To overcome this issue, we propose an adaptive group p-values combination test which is robust against both high dimensionality and normality. Simulation studies show that the proposed test controls type I error rates correctly and outperforms some existing tests in most situations. An Ageing Human Brain Microarray data are used to further exemplify the method. Nature Publishing Group UK 2018-05-25 /pmc/articles/PMC5970252/ /pubmed/29802271 http://dx.doi.org/10.1038/s41598-018-26409-1 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Zhang, Shenghu
Zhu, Jiayan
Li, Zhengbang
Adaptive Group-combined P-values Test for Two-sample Location Problem with Applications to Microarray Data
title Adaptive Group-combined P-values Test for Two-sample Location Problem with Applications to Microarray Data
title_full Adaptive Group-combined P-values Test for Two-sample Location Problem with Applications to Microarray Data
title_fullStr Adaptive Group-combined P-values Test for Two-sample Location Problem with Applications to Microarray Data
title_full_unstemmed Adaptive Group-combined P-values Test for Two-sample Location Problem with Applications to Microarray Data
title_short Adaptive Group-combined P-values Test for Two-sample Location Problem with Applications to Microarray Data
title_sort adaptive group-combined p-values test for two-sample location problem with applications to microarray data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5970252/
https://www.ncbi.nlm.nih.gov/pubmed/29802271
http://dx.doi.org/10.1038/s41598-018-26409-1
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