Cargando…

Dynamic causal modelling on infant fNIRS data: A validation study on a simultaneously recorded fNIRS-fMRI dataset

Tracking the connectivity of the developing brain from infancy through childhood is an area of increasing research interest, and fNIRS provides an ideal method for studying the infant brain as it is compact, safe and robust to motion. However, data analysis methods for fNIRS are still underdeveloped...

Descripción completa

Detalles Bibliográficos
Autores principales: Bulgarelli, Chiara, Blasi, Anna, Arridge, Simon, Powell, Samuel, de Klerk, Carina C.J.M., Southgate, Victoria, Brigadoi, Sabrina, Penny, William, Tak, Sungho, Hamilton, Antonia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Academic Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5971219/
https://www.ncbi.nlm.nih.gov/pubmed/29655936
http://dx.doi.org/10.1016/j.neuroimage.2018.04.022
_version_ 1783326244484415488
author Bulgarelli, Chiara
Blasi, Anna
Arridge, Simon
Powell, Samuel
de Klerk, Carina C.J.M.
Southgate, Victoria
Brigadoi, Sabrina
Penny, William
Tak, Sungho
Hamilton, Antonia
author_facet Bulgarelli, Chiara
Blasi, Anna
Arridge, Simon
Powell, Samuel
de Klerk, Carina C.J.M.
Southgate, Victoria
Brigadoi, Sabrina
Penny, William
Tak, Sungho
Hamilton, Antonia
author_sort Bulgarelli, Chiara
collection PubMed
description Tracking the connectivity of the developing brain from infancy through childhood is an area of increasing research interest, and fNIRS provides an ideal method for studying the infant brain as it is compact, safe and robust to motion. However, data analysis methods for fNIRS are still underdeveloped compared to those available for fMRI. Dynamic causal modelling (DCM) is an advanced connectivity technique developed for fMRI data, that aims to estimate the coupling between brain regions and how this might be modulated by changes in experimental conditions. DCM has recently been applied to adult fNIRS, but not to infants. The present paper provides a proof-of-principle for the application of this method to infant fNIRS data and a demonstration of the robustness of this method using a simultaneously recorded fMRI-fNIRS single case study, thereby allowing the use of this technique in future infant studies. fMRI and fNIRS were simultaneously recorded from a 6-month-old sleeping infant, who was presented with auditory stimuli in a block design. Both fMRI and fNIRS data were preprocessed using SPM, and analysed using a general linear model approach. The main challenges that adapting DCM for fNIRS infant data posed included: (i) the import of the structural image of the participant for spatial pre-processing, (ii) the spatial registration of the optodes on the structural image of the infant, (iii) calculation of an accurate 3-layer segmentation of the structural image, (iv) creation of a high-density mesh as well as (v) the estimation of the NIRS optical sensitivity functions. To assess our results, we compared the values obtained for variational Free Energy (F), Bayesian Model Selection (BMS) and Bayesian Model Average (BMA) with the same set of possible models applied to both the fMRI and fNIRS datasets. We found high correspondence in F, BMS, and BMA between fMRI and fNIRS data, therefore showing for the first time high reliability of DCM applied to infant fNIRS data. This work opens new avenues for future research on effective connectivity in infancy by contributing a data analysis pipeline and guidance for applying DCM to infant fNIRS data.
format Online
Article
Text
id pubmed-5971219
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Academic Press
record_format MEDLINE/PubMed
spelling pubmed-59712192018-07-15 Dynamic causal modelling on infant fNIRS data: A validation study on a simultaneously recorded fNIRS-fMRI dataset Bulgarelli, Chiara Blasi, Anna Arridge, Simon Powell, Samuel de Klerk, Carina C.J.M. Southgate, Victoria Brigadoi, Sabrina Penny, William Tak, Sungho Hamilton, Antonia Neuroimage Article Tracking the connectivity of the developing brain from infancy through childhood is an area of increasing research interest, and fNIRS provides an ideal method for studying the infant brain as it is compact, safe and robust to motion. However, data analysis methods for fNIRS are still underdeveloped compared to those available for fMRI. Dynamic causal modelling (DCM) is an advanced connectivity technique developed for fMRI data, that aims to estimate the coupling between brain regions and how this might be modulated by changes in experimental conditions. DCM has recently been applied to adult fNIRS, but not to infants. The present paper provides a proof-of-principle for the application of this method to infant fNIRS data and a demonstration of the robustness of this method using a simultaneously recorded fMRI-fNIRS single case study, thereby allowing the use of this technique in future infant studies. fMRI and fNIRS were simultaneously recorded from a 6-month-old sleeping infant, who was presented with auditory stimuli in a block design. Both fMRI and fNIRS data were preprocessed using SPM, and analysed using a general linear model approach. The main challenges that adapting DCM for fNIRS infant data posed included: (i) the import of the structural image of the participant for spatial pre-processing, (ii) the spatial registration of the optodes on the structural image of the infant, (iii) calculation of an accurate 3-layer segmentation of the structural image, (iv) creation of a high-density mesh as well as (v) the estimation of the NIRS optical sensitivity functions. To assess our results, we compared the values obtained for variational Free Energy (F), Bayesian Model Selection (BMS) and Bayesian Model Average (BMA) with the same set of possible models applied to both the fMRI and fNIRS datasets. We found high correspondence in F, BMS, and BMA between fMRI and fNIRS data, therefore showing for the first time high reliability of DCM applied to infant fNIRS data. This work opens new avenues for future research on effective connectivity in infancy by contributing a data analysis pipeline and guidance for applying DCM to infant fNIRS data. Academic Press 2018-07-15 /pmc/articles/PMC5971219/ /pubmed/29655936 http://dx.doi.org/10.1016/j.neuroimage.2018.04.022 Text en © 2018 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Bulgarelli, Chiara
Blasi, Anna
Arridge, Simon
Powell, Samuel
de Klerk, Carina C.J.M.
Southgate, Victoria
Brigadoi, Sabrina
Penny, William
Tak, Sungho
Hamilton, Antonia
Dynamic causal modelling on infant fNIRS data: A validation study on a simultaneously recorded fNIRS-fMRI dataset
title Dynamic causal modelling on infant fNIRS data: A validation study on a simultaneously recorded fNIRS-fMRI dataset
title_full Dynamic causal modelling on infant fNIRS data: A validation study on a simultaneously recorded fNIRS-fMRI dataset
title_fullStr Dynamic causal modelling on infant fNIRS data: A validation study on a simultaneously recorded fNIRS-fMRI dataset
title_full_unstemmed Dynamic causal modelling on infant fNIRS data: A validation study on a simultaneously recorded fNIRS-fMRI dataset
title_short Dynamic causal modelling on infant fNIRS data: A validation study on a simultaneously recorded fNIRS-fMRI dataset
title_sort dynamic causal modelling on infant fnirs data: a validation study on a simultaneously recorded fnirs-fmri dataset
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5971219/
https://www.ncbi.nlm.nih.gov/pubmed/29655936
http://dx.doi.org/10.1016/j.neuroimage.2018.04.022
work_keys_str_mv AT bulgarellichiara dynamiccausalmodellingoninfantfnirsdataavalidationstudyonasimultaneouslyrecordedfnirsfmridataset
AT blasianna dynamiccausalmodellingoninfantfnirsdataavalidationstudyonasimultaneouslyrecordedfnirsfmridataset
AT arridgesimon dynamiccausalmodellingoninfantfnirsdataavalidationstudyonasimultaneouslyrecordedfnirsfmridataset
AT powellsamuel dynamiccausalmodellingoninfantfnirsdataavalidationstudyonasimultaneouslyrecordedfnirsfmridataset
AT deklerkcarinacjm dynamiccausalmodellingoninfantfnirsdataavalidationstudyonasimultaneouslyrecordedfnirsfmridataset
AT southgatevictoria dynamiccausalmodellingoninfantfnirsdataavalidationstudyonasimultaneouslyrecordedfnirsfmridataset
AT brigadoisabrina dynamiccausalmodellingoninfantfnirsdataavalidationstudyonasimultaneouslyrecordedfnirsfmridataset
AT pennywilliam dynamiccausalmodellingoninfantfnirsdataavalidationstudyonasimultaneouslyrecordedfnirsfmridataset
AT taksungho dynamiccausalmodellingoninfantfnirsdataavalidationstudyonasimultaneouslyrecordedfnirsfmridataset
AT hamiltonantonia dynamiccausalmodellingoninfantfnirsdataavalidationstudyonasimultaneouslyrecordedfnirsfmridataset