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Deep Learning Role in Early Diagnosis of Prostate Cancer

The objective of this work is to develop a computer-aided diagnostic system for early diagnosis of prostate cancer. The presented system integrates both clinical biomarkers (prostate-specific antigen) and extracted features from diffusion-weighted magnetic resonance imaging collected at multiple b v...

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Autores principales: Reda, Islam, Khalil, Ashraf, Elmogy, Mohammed, Abou El-Fetouh, Ahmed, Shalaby, Ahmed, Abou El-Ghar, Mohamed, Elmaghraby, Adel, Ghazal, Mohammed, El-Baz, Ayman
Formato: Online Artículo Texto
Lenguaje:English
Publicado: SAGE Publications 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5972199/
https://www.ncbi.nlm.nih.gov/pubmed/29804518
http://dx.doi.org/10.1177/1533034618775530
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author Reda, Islam
Khalil, Ashraf
Elmogy, Mohammed
Abou El-Fetouh, Ahmed
Shalaby, Ahmed
Abou El-Ghar, Mohamed
Elmaghraby, Adel
Ghazal, Mohammed
El-Baz, Ayman
author_facet Reda, Islam
Khalil, Ashraf
Elmogy, Mohammed
Abou El-Fetouh, Ahmed
Shalaby, Ahmed
Abou El-Ghar, Mohamed
Elmaghraby, Adel
Ghazal, Mohammed
El-Baz, Ayman
author_sort Reda, Islam
collection PubMed
description The objective of this work is to develop a computer-aided diagnostic system for early diagnosis of prostate cancer. The presented system integrates both clinical biomarkers (prostate-specific antigen) and extracted features from diffusion-weighted magnetic resonance imaging collected at multiple b values. The presented system performs 3 major processing steps. First, prostate delineation using a hybrid approach that combines a level-set model with nonnegative matrix factorization. Second, estimation and normalization of diffusion parameters, which are the apparent diffusion coefficients of the delineated prostate volumes at different b values followed by refinement of those apparent diffusion coefficients using a generalized Gaussian Markov random field model. Then, construction of the cumulative distribution functions of the processed apparent diffusion coefficients at multiple b values. In parallel, a K-nearest neighbor classifier is employed to transform the prostate-specific antigen results into diagnostic probabilities. Finally, those prostate-specific antigen–based probabilities are integrated with the initial diagnostic probabilities obtained using stacked nonnegativity constraint sparse autoencoders that employ apparent diffusion coefficient–cumulative distribution functions for better diagnostic accuracy. Experiments conducted on 18 diffusion-weighted magnetic resonance imaging data sets achieved 94.4% diagnosis accuracy (sensitivity = 88.9% and specificity = 100%), which indicate the promising results of the presented computer-aided diagnostic system.
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spelling pubmed-59721992018-05-31 Deep Learning Role in Early Diagnosis of Prostate Cancer Reda, Islam Khalil, Ashraf Elmogy, Mohammed Abou El-Fetouh, Ahmed Shalaby, Ahmed Abou El-Ghar, Mohamed Elmaghraby, Adel Ghazal, Mohammed El-Baz, Ayman Technol Cancer Res Treat Special Collection on Deep Learning in Molecular Imaging–Research Paper The objective of this work is to develop a computer-aided diagnostic system for early diagnosis of prostate cancer. The presented system integrates both clinical biomarkers (prostate-specific antigen) and extracted features from diffusion-weighted magnetic resonance imaging collected at multiple b values. The presented system performs 3 major processing steps. First, prostate delineation using a hybrid approach that combines a level-set model with nonnegative matrix factorization. Second, estimation and normalization of diffusion parameters, which are the apparent diffusion coefficients of the delineated prostate volumes at different b values followed by refinement of those apparent diffusion coefficients using a generalized Gaussian Markov random field model. Then, construction of the cumulative distribution functions of the processed apparent diffusion coefficients at multiple b values. In parallel, a K-nearest neighbor classifier is employed to transform the prostate-specific antigen results into diagnostic probabilities. Finally, those prostate-specific antigen–based probabilities are integrated with the initial diagnostic probabilities obtained using stacked nonnegativity constraint sparse autoencoders that employ apparent diffusion coefficient–cumulative distribution functions for better diagnostic accuracy. Experiments conducted on 18 diffusion-weighted magnetic resonance imaging data sets achieved 94.4% diagnosis accuracy (sensitivity = 88.9% and specificity = 100%), which indicate the promising results of the presented computer-aided diagnostic system. SAGE Publications 2018-05-27 /pmc/articles/PMC5972199/ /pubmed/29804518 http://dx.doi.org/10.1177/1533034618775530 Text en © The Author(s) 2018 http://creativecommons.org/licenses/by-nc/4.0/ This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (http://www.creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage).
spellingShingle Special Collection on Deep Learning in Molecular Imaging–Research Paper
Reda, Islam
Khalil, Ashraf
Elmogy, Mohammed
Abou El-Fetouh, Ahmed
Shalaby, Ahmed
Abou El-Ghar, Mohamed
Elmaghraby, Adel
Ghazal, Mohammed
El-Baz, Ayman
Deep Learning Role in Early Diagnosis of Prostate Cancer
title Deep Learning Role in Early Diagnosis of Prostate Cancer
title_full Deep Learning Role in Early Diagnosis of Prostate Cancer
title_fullStr Deep Learning Role in Early Diagnosis of Prostate Cancer
title_full_unstemmed Deep Learning Role in Early Diagnosis of Prostate Cancer
title_short Deep Learning Role in Early Diagnosis of Prostate Cancer
title_sort deep learning role in early diagnosis of prostate cancer
topic Special Collection on Deep Learning in Molecular Imaging–Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5972199/
https://www.ncbi.nlm.nih.gov/pubmed/29804518
http://dx.doi.org/10.1177/1533034618775530
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