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CHROMIXS: automatic and interactive analysis of chromatography-coupled small-angle X-ray scattering data
SUMMARY: Size-exclusion chromatography (SEC) coupled to small-angle X-ray scattering (SAXS), also known as inline SEC-SAXS, is being increasingly used for the structural analysis of biological macromolecules, complexes and mixtures in solution. A single SEC-SAXS run generates thousands of individual...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5972624/ https://www.ncbi.nlm.nih.gov/pubmed/29300836 http://dx.doi.org/10.1093/bioinformatics/btx846 |
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author | Panjkovich, Alejandro Svergun, Dmitri I |
author_facet | Panjkovich, Alejandro Svergun, Dmitri I |
author_sort | Panjkovich, Alejandro |
collection | PubMed |
description | SUMMARY: Size-exclusion chromatography (SEC) coupled to small-angle X-ray scattering (SAXS), also known as inline SEC-SAXS, is being increasingly used for the structural analysis of biological macromolecules, complexes and mixtures in solution. A single SEC-SAXS run generates thousands of individual SAXS profiles from the eluting solute and their analysis requires a correct identification of buffer and sample regions, a rather laborous task. We present CHROMIXS (as in CHROMatography Inline X-ray Scattering), a program for rapid reduction and analysis, both automatically and interactively, of SEC-SAXS data. AVAILABILITY AND IMPLEMENTATION: CHROMIXS is freely available to academic users as part of the ATSAS software suite (www.embl-hamburg.de/biosaxs/download.html). |
format | Online Article Text |
id | pubmed-5972624 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-59726242018-06-04 CHROMIXS: automatic and interactive analysis of chromatography-coupled small-angle X-ray scattering data Panjkovich, Alejandro Svergun, Dmitri I Bioinformatics Applications Notes SUMMARY: Size-exclusion chromatography (SEC) coupled to small-angle X-ray scattering (SAXS), also known as inline SEC-SAXS, is being increasingly used for the structural analysis of biological macromolecules, complexes and mixtures in solution. A single SEC-SAXS run generates thousands of individual SAXS profiles from the eluting solute and their analysis requires a correct identification of buffer and sample regions, a rather laborous task. We present CHROMIXS (as in CHROMatography Inline X-ray Scattering), a program for rapid reduction and analysis, both automatically and interactively, of SEC-SAXS data. AVAILABILITY AND IMPLEMENTATION: CHROMIXS is freely available to academic users as part of the ATSAS software suite (www.embl-hamburg.de/biosaxs/download.html). Oxford University Press 2018-06-01 2017-12-28 /pmc/articles/PMC5972624/ /pubmed/29300836 http://dx.doi.org/10.1093/bioinformatics/btx846 Text en © The Author(s) 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Applications Notes Panjkovich, Alejandro Svergun, Dmitri I CHROMIXS: automatic and interactive analysis of chromatography-coupled small-angle X-ray scattering data |
title | CHROMIXS: automatic and interactive analysis of chromatography-coupled small-angle X-ray scattering data |
title_full | CHROMIXS: automatic and interactive analysis of chromatography-coupled small-angle X-ray scattering data |
title_fullStr | CHROMIXS: automatic and interactive analysis of chromatography-coupled small-angle X-ray scattering data |
title_full_unstemmed | CHROMIXS: automatic and interactive analysis of chromatography-coupled small-angle X-ray scattering data |
title_short | CHROMIXS: automatic and interactive analysis of chromatography-coupled small-angle X-ray scattering data |
title_sort | chromixs: automatic and interactive analysis of chromatography-coupled small-angle x-ray scattering data |
topic | Applications Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5972624/ https://www.ncbi.nlm.nih.gov/pubmed/29300836 http://dx.doi.org/10.1093/bioinformatics/btx846 |
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