Sequanix: a dynamic graphical interface for Snakemake workflows

SUMMARY: We designed a PyQt graphical user interface—Sequanix—aimed at democratizing the use of Snakemake pipelines in the NGS space and beyond. By default, Sequanix includes Sequana NGS pipelines (Snakemake format) (http://sequana.readthedocs.io), and is also capable of loading any external Snakema...

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Detalles Bibliográficos
Autores principales: Desvillechabrol, Dimitri, Legendre, Rachel, Rioualen, Claire, Bouchier, Christiane, van Helden, Jacques, Kennedy, Sean, Cokelaer, Thomas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5972652/
https://www.ncbi.nlm.nih.gov/pubmed/29361152
http://dx.doi.org/10.1093/bioinformatics/bty034
Descripción
Sumario:SUMMARY: We designed a PyQt graphical user interface—Sequanix—aimed at democratizing the use of Snakemake pipelines in the NGS space and beyond. By default, Sequanix includes Sequana NGS pipelines (Snakemake format) (http://sequana.readthedocs.io), and is also capable of loading any external Snakemake pipeline. New users can easily, visually, edit configuration files of expert-validated pipelines and can interactively execute these production-ready workflows. Sequanix will be useful to both Snakemake developers in exposing their pipelines and to a wide audience of users. AVAILABILITY AND IMPLEMENTATION: Source on http://github.com/sequana/sequana, bio-containers on http://bioconda.github.io and Singularity hub (http://singularity-hub.org). SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

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