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Modeling quantum nuclei with perturbed path integral molecular dynamics
The quantum nature of nuclear motions plays a vital role in the structure, stability, and thermodynamics of molecules and materials. The standard approach to model nuclear quantum fluctuations in chemical and biological systems is to use path-integral molecular dynamics. Unfortunately, conventional...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Royal Society of Chemistry
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5975916/ https://www.ncbi.nlm.nih.gov/pubmed/29910893 http://dx.doi.org/10.1039/c5sc03443d |
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author | Poltavsky, Igor Tkatchenko, Alexandre |
author_facet | Poltavsky, Igor Tkatchenko, Alexandre |
author_sort | Poltavsky, Igor |
collection | PubMed |
description | The quantum nature of nuclear motions plays a vital role in the structure, stability, and thermodynamics of molecules and materials. The standard approach to model nuclear quantum fluctuations in chemical and biological systems is to use path-integral molecular dynamics. Unfortunately, conventional path-integral simulations can have an exceedingly large computational cost due to the need to employ an excessive number of coupled classical subsystems (beads) for quantitative accuracy. Here, we combine perturbation theory with the Feynman–Kac imaginary-time path integral approach to quantum mechanics and derive an improved non-empirical partition function and estimators to calculate converged quantum observables. Our perturbed path-integral (PPI) method requires the same ingredients as the conventional approach, but increases the accuracy and efficiency of path integral simulations by an order of magnitude. Results are presented for the thermodynamics of fundamental model systems, an empirical water model containing 256 water molecules within periodic boundary conditions, and ab initio simulations of nitrogen and benzene molecules. For all of these examples, PPI simulations with 4 to 8 classical beads recover the nuclear quantum contribution to the total energy and heat capacity at room temperature within a 3% accuracy, paving the way toward seamless modeling of nuclear quantum effects in realistic molecules and materials. |
format | Online Article Text |
id | pubmed-5975916 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-59759162018-06-15 Modeling quantum nuclei with perturbed path integral molecular dynamics Poltavsky, Igor Tkatchenko, Alexandre Chem Sci Chemistry The quantum nature of nuclear motions plays a vital role in the structure, stability, and thermodynamics of molecules and materials. The standard approach to model nuclear quantum fluctuations in chemical and biological systems is to use path-integral molecular dynamics. Unfortunately, conventional path-integral simulations can have an exceedingly large computational cost due to the need to employ an excessive number of coupled classical subsystems (beads) for quantitative accuracy. Here, we combine perturbation theory with the Feynman–Kac imaginary-time path integral approach to quantum mechanics and derive an improved non-empirical partition function and estimators to calculate converged quantum observables. Our perturbed path-integral (PPI) method requires the same ingredients as the conventional approach, but increases the accuracy and efficiency of path integral simulations by an order of magnitude. Results are presented for the thermodynamics of fundamental model systems, an empirical water model containing 256 water molecules within periodic boundary conditions, and ab initio simulations of nitrogen and benzene molecules. For all of these examples, PPI simulations with 4 to 8 classical beads recover the nuclear quantum contribution to the total energy and heat capacity at room temperature within a 3% accuracy, paving the way toward seamless modeling of nuclear quantum effects in realistic molecules and materials. Royal Society of Chemistry 2016-02-01 2015-10-30 /pmc/articles/PMC5975916/ /pubmed/29910893 http://dx.doi.org/10.1039/c5sc03443d Text en This journal is © The Royal Society of Chemistry 2016 http://creativecommons.org/licenses/by-nc/3.0/ This article is freely available. This article is licensed under a Creative Commons Attribution Non Commercial 3.0 Unported Licence (CC BY-NC 3.0) |
spellingShingle | Chemistry Poltavsky, Igor Tkatchenko, Alexandre Modeling quantum nuclei with perturbed path integral molecular dynamics |
title | Modeling quantum nuclei with perturbed path integral molecular dynamics
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title_full | Modeling quantum nuclei with perturbed path integral molecular dynamics
|
title_fullStr | Modeling quantum nuclei with perturbed path integral molecular dynamics
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title_full_unstemmed | Modeling quantum nuclei with perturbed path integral molecular dynamics
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title_short | Modeling quantum nuclei with perturbed path integral molecular dynamics
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title_sort | modeling quantum nuclei with perturbed path integral molecular dynamics |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5975916/ https://www.ncbi.nlm.nih.gov/pubmed/29910893 http://dx.doi.org/10.1039/c5sc03443d |
work_keys_str_mv | AT poltavskyigor modelingquantumnucleiwithperturbedpathintegralmoleculardynamics AT tkatchenkoalexandre modelingquantumnucleiwithperturbedpathintegralmoleculardynamics |