Cargando…

Modeling quantum nuclei with perturbed path integral molecular dynamics

The quantum nature of nuclear motions plays a vital role in the structure, stability, and thermodynamics of molecules and materials. The standard approach to model nuclear quantum fluctuations in chemical and biological systems is to use path-integral molecular dynamics. Unfortunately, conventional...

Descripción completa

Detalles Bibliográficos
Autores principales: Poltavsky, Igor, Tkatchenko, Alexandre
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Royal Society of Chemistry 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5975916/
https://www.ncbi.nlm.nih.gov/pubmed/29910893
http://dx.doi.org/10.1039/c5sc03443d
_version_ 1783327089695391744
author Poltavsky, Igor
Tkatchenko, Alexandre
author_facet Poltavsky, Igor
Tkatchenko, Alexandre
author_sort Poltavsky, Igor
collection PubMed
description The quantum nature of nuclear motions plays a vital role in the structure, stability, and thermodynamics of molecules and materials. The standard approach to model nuclear quantum fluctuations in chemical and biological systems is to use path-integral molecular dynamics. Unfortunately, conventional path-integral simulations can have an exceedingly large computational cost due to the need to employ an excessive number of coupled classical subsystems (beads) for quantitative accuracy. Here, we combine perturbation theory with the Feynman–Kac imaginary-time path integral approach to quantum mechanics and derive an improved non-empirical partition function and estimators to calculate converged quantum observables. Our perturbed path-integral (PPI) method requires the same ingredients as the conventional approach, but increases the accuracy and efficiency of path integral simulations by an order of magnitude. Results are presented for the thermodynamics of fundamental model systems, an empirical water model containing 256 water molecules within periodic boundary conditions, and ab initio simulations of nitrogen and benzene molecules. For all of these examples, PPI simulations with 4 to 8 classical beads recover the nuclear quantum contribution to the total energy and heat capacity at room temperature within a 3% accuracy, paving the way toward seamless modeling of nuclear quantum effects in realistic molecules and materials.
format Online
Article
Text
id pubmed-5975916
institution National Center for Biotechnology Information
language English
publishDate 2016
publisher Royal Society of Chemistry
record_format MEDLINE/PubMed
spelling pubmed-59759162018-06-15 Modeling quantum nuclei with perturbed path integral molecular dynamics Poltavsky, Igor Tkatchenko, Alexandre Chem Sci Chemistry The quantum nature of nuclear motions plays a vital role in the structure, stability, and thermodynamics of molecules and materials. The standard approach to model nuclear quantum fluctuations in chemical and biological systems is to use path-integral molecular dynamics. Unfortunately, conventional path-integral simulations can have an exceedingly large computational cost due to the need to employ an excessive number of coupled classical subsystems (beads) for quantitative accuracy. Here, we combine perturbation theory with the Feynman–Kac imaginary-time path integral approach to quantum mechanics and derive an improved non-empirical partition function and estimators to calculate converged quantum observables. Our perturbed path-integral (PPI) method requires the same ingredients as the conventional approach, but increases the accuracy and efficiency of path integral simulations by an order of magnitude. Results are presented for the thermodynamics of fundamental model systems, an empirical water model containing 256 water molecules within periodic boundary conditions, and ab initio simulations of nitrogen and benzene molecules. For all of these examples, PPI simulations with 4 to 8 classical beads recover the nuclear quantum contribution to the total energy and heat capacity at room temperature within a 3% accuracy, paving the way toward seamless modeling of nuclear quantum effects in realistic molecules and materials. Royal Society of Chemistry 2016-02-01 2015-10-30 /pmc/articles/PMC5975916/ /pubmed/29910893 http://dx.doi.org/10.1039/c5sc03443d Text en This journal is © The Royal Society of Chemistry 2016 http://creativecommons.org/licenses/by-nc/3.0/ This article is freely available. This article is licensed under a Creative Commons Attribution Non Commercial 3.0 Unported Licence (CC BY-NC 3.0)
spellingShingle Chemistry
Poltavsky, Igor
Tkatchenko, Alexandre
Modeling quantum nuclei with perturbed path integral molecular dynamics
title Modeling quantum nuclei with perturbed path integral molecular dynamics
title_full Modeling quantum nuclei with perturbed path integral molecular dynamics
title_fullStr Modeling quantum nuclei with perturbed path integral molecular dynamics
title_full_unstemmed Modeling quantum nuclei with perturbed path integral molecular dynamics
title_short Modeling quantum nuclei with perturbed path integral molecular dynamics
title_sort modeling quantum nuclei with perturbed path integral molecular dynamics
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5975916/
https://www.ncbi.nlm.nih.gov/pubmed/29910893
http://dx.doi.org/10.1039/c5sc03443d
work_keys_str_mv AT poltavskyigor modelingquantumnucleiwithperturbedpathintegralmoleculardynamics
AT tkatchenkoalexandre modelingquantumnucleiwithperturbedpathintegralmoleculardynamics