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Transcriptome analysis of the reef-building octocoral, Heliopora coerulea
The blue coral, Heliopora coerulea, is a reef-building octocoral that prefers shallow water and exhibits optimal growth at a temperature close to that which causes bleaching in scleractinian corals. To better understand the molecular mechanisms underlying its biology and ecology, we generated a refe...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5976621/ https://www.ncbi.nlm.nih.gov/pubmed/29849113 http://dx.doi.org/10.1038/s41598-018-26718-5 |
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author | Guzman, Christine Shinzato, Chuya Lu, Tsai-Ming Conaco, Cecilia |
author_facet | Guzman, Christine Shinzato, Chuya Lu, Tsai-Ming Conaco, Cecilia |
author_sort | Guzman, Christine |
collection | PubMed |
description | The blue coral, Heliopora coerulea, is a reef-building octocoral that prefers shallow water and exhibits optimal growth at a temperature close to that which causes bleaching in scleractinian corals. To better understand the molecular mechanisms underlying its biology and ecology, we generated a reference transcriptome for H. coerulea using next-generation sequencing. Metatranscriptome assembly yielded 90,817 sequences of which 71% (64,610) could be annotated by comparison to public databases. The assembly included transcript sequences from both the coral host and its symbionts, which are related to the thermotolerant C3-Gulf ITS2 type Symbiodinium. Analysis of the blue coral transcriptome revealed enrichment of genes involved in stress response, including heat-shock proteins and antioxidants, as well as genes participating in signal transduction and stimulus response. Furthermore, the blue coral possesses homologs of biomineralization genes found in other corals and may use a biomineralization strategy similar to that of scleractinians to build its massive aragonite skeleton. These findings thus offer insights into the ecology of H. coerulea and suggest gene networks that may govern its interactions with its environment. |
format | Online Article Text |
id | pubmed-5976621 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-59766212018-05-31 Transcriptome analysis of the reef-building octocoral, Heliopora coerulea Guzman, Christine Shinzato, Chuya Lu, Tsai-Ming Conaco, Cecilia Sci Rep Article The blue coral, Heliopora coerulea, is a reef-building octocoral that prefers shallow water and exhibits optimal growth at a temperature close to that which causes bleaching in scleractinian corals. To better understand the molecular mechanisms underlying its biology and ecology, we generated a reference transcriptome for H. coerulea using next-generation sequencing. Metatranscriptome assembly yielded 90,817 sequences of which 71% (64,610) could be annotated by comparison to public databases. The assembly included transcript sequences from both the coral host and its symbionts, which are related to the thermotolerant C3-Gulf ITS2 type Symbiodinium. Analysis of the blue coral transcriptome revealed enrichment of genes involved in stress response, including heat-shock proteins and antioxidants, as well as genes participating in signal transduction and stimulus response. Furthermore, the blue coral possesses homologs of biomineralization genes found in other corals and may use a biomineralization strategy similar to that of scleractinians to build its massive aragonite skeleton. These findings thus offer insights into the ecology of H. coerulea and suggest gene networks that may govern its interactions with its environment. Nature Publishing Group UK 2018-05-30 /pmc/articles/PMC5976621/ /pubmed/29849113 http://dx.doi.org/10.1038/s41598-018-26718-5 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Guzman, Christine Shinzato, Chuya Lu, Tsai-Ming Conaco, Cecilia Transcriptome analysis of the reef-building octocoral, Heliopora coerulea |
title | Transcriptome analysis of the reef-building octocoral, Heliopora coerulea |
title_full | Transcriptome analysis of the reef-building octocoral, Heliopora coerulea |
title_fullStr | Transcriptome analysis of the reef-building octocoral, Heliopora coerulea |
title_full_unstemmed | Transcriptome analysis of the reef-building octocoral, Heliopora coerulea |
title_short | Transcriptome analysis of the reef-building octocoral, Heliopora coerulea |
title_sort | transcriptome analysis of the reef-building octocoral, heliopora coerulea |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5976621/ https://www.ncbi.nlm.nih.gov/pubmed/29849113 http://dx.doi.org/10.1038/s41598-018-26718-5 |
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