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Rigorous optimisation of multilinear discriminant analysis with Tucker and PARAFAC structures

BACKGROUND: We propose rigorously optimised supervised feature extraction methods for multilinear data based on Multilinear Discriminant Analysis (MDA) and demonstrate their usage on Electroencephalography (EEG) and simulated data. While existing MDA methods use heuristic optimisation procedures bas...

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Autores principales: Frølich, Laura, Andersen, Tobias Søren, Mørup, Morten
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5977741/
https://www.ncbi.nlm.nih.gov/pubmed/29848301
http://dx.doi.org/10.1186/s12859-018-2188-0
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author Frølich, Laura
Andersen, Tobias Søren
Mørup, Morten
author_facet Frølich, Laura
Andersen, Tobias Søren
Mørup, Morten
author_sort Frølich, Laura
collection PubMed
description BACKGROUND: We propose rigorously optimised supervised feature extraction methods for multilinear data based on Multilinear Discriminant Analysis (MDA) and demonstrate their usage on Electroencephalography (EEG) and simulated data. While existing MDA methods use heuristic optimisation procedures based on an ambiguous Tucker structure, we propose a rigorous approach via optimisation on the cross-product of Stiefel manifolds. We also introduce MDA methods with the PARAFAC structure. We compare the proposed approaches to existing MDA methods and unsupervised multilinear decompositions. RESULTS: We find that manifold optimisation substantially improves MDA objective functions relative to existing methods and on simulated data in general improve classification performance. However, we find similar classification performance when applied to the electroencephalography data. Furthermore, supervised approaches substantially outperform unsupervised mulitilinear methods whereas methods with the PARAFAC structure perform similarly to those with Tucker structures. Notably, despite applying the MDA procedures to raw Brain-Computer Interface data, their performances are on par with results employing ample pre-processing and they extract discriminatory patterns similar to the brain activity known to be elicited in the investigated EEG paradigms. CONCLUSION: The proposed usage of manifold optimisation constitutes the first rigorous and monotonous optimisation approach for MDA methods and allows for MDA with the PARAFAC structure. Our results show that MDA methods applied to raw EEG data can extract discriminatory patterns when compared to traditional unsupervised multilinear feature extraction approaches, whereas the proposed PARAFAC structured MDA models provide meaningful patterns of activity. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12859-018-2188-0) contains supplementary material, which is available to authorized users.
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spelling pubmed-59777412018-06-06 Rigorous optimisation of multilinear discriminant analysis with Tucker and PARAFAC structures Frølich, Laura Andersen, Tobias Søren Mørup, Morten BMC Bioinformatics Methodology Article BACKGROUND: We propose rigorously optimised supervised feature extraction methods for multilinear data based on Multilinear Discriminant Analysis (MDA) and demonstrate their usage on Electroencephalography (EEG) and simulated data. While existing MDA methods use heuristic optimisation procedures based on an ambiguous Tucker structure, we propose a rigorous approach via optimisation on the cross-product of Stiefel manifolds. We also introduce MDA methods with the PARAFAC structure. We compare the proposed approaches to existing MDA methods and unsupervised multilinear decompositions. RESULTS: We find that manifold optimisation substantially improves MDA objective functions relative to existing methods and on simulated data in general improve classification performance. However, we find similar classification performance when applied to the electroencephalography data. Furthermore, supervised approaches substantially outperform unsupervised mulitilinear methods whereas methods with the PARAFAC structure perform similarly to those with Tucker structures. Notably, despite applying the MDA procedures to raw Brain-Computer Interface data, their performances are on par with results employing ample pre-processing and they extract discriminatory patterns similar to the brain activity known to be elicited in the investigated EEG paradigms. CONCLUSION: The proposed usage of manifold optimisation constitutes the first rigorous and monotonous optimisation approach for MDA methods and allows for MDA with the PARAFAC structure. Our results show that MDA methods applied to raw EEG data can extract discriminatory patterns when compared to traditional unsupervised multilinear feature extraction approaches, whereas the proposed PARAFAC structured MDA models provide meaningful patterns of activity. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12859-018-2188-0) contains supplementary material, which is available to authorized users. BioMed Central 2018-05-30 /pmc/articles/PMC5977741/ /pubmed/29848301 http://dx.doi.org/10.1186/s12859-018-2188-0 Text en © The Author(s) 2018 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License(http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Methodology Article
Frølich, Laura
Andersen, Tobias Søren
Mørup, Morten
Rigorous optimisation of multilinear discriminant analysis with Tucker and PARAFAC structures
title Rigorous optimisation of multilinear discriminant analysis with Tucker and PARAFAC structures
title_full Rigorous optimisation of multilinear discriminant analysis with Tucker and PARAFAC structures
title_fullStr Rigorous optimisation of multilinear discriminant analysis with Tucker and PARAFAC structures
title_full_unstemmed Rigorous optimisation of multilinear discriminant analysis with Tucker and PARAFAC structures
title_short Rigorous optimisation of multilinear discriminant analysis with Tucker and PARAFAC structures
title_sort rigorous optimisation of multilinear discriminant analysis with tucker and parafac structures
topic Methodology Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5977741/
https://www.ncbi.nlm.nih.gov/pubmed/29848301
http://dx.doi.org/10.1186/s12859-018-2188-0
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