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Mining Patients' Narratives in Social Media for Pharmacovigilance: Adverse Effects and Misuse of Methylphenidate
Background: The Food and Drug Administration (FDA) in the United States and the European Medicines Agency (EMA) have recognized social media as a new data source to strengthen their activities regarding drug safety. Objective: Our objective in the ADR-PRISM project was to provide text mining and vis...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5978246/ https://www.ncbi.nlm.nih.gov/pubmed/29881351 http://dx.doi.org/10.3389/fphar.2018.00541 |
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author | Chen, Xiaoyi Faviez, Carole Schuck, Stéphane Lillo-Le-Louët, Agnès Texier, Nathalie Dahamna, Badisse Huot, Charles Foulquié, Pierre Pereira, Suzanne Leroux, Vincent Karapetiantz, Pierre Guenegou-Arnoux, Armelle Katsahian, Sandrine Bousquet, Cédric Burgun, Anita |
author_facet | Chen, Xiaoyi Faviez, Carole Schuck, Stéphane Lillo-Le-Louët, Agnès Texier, Nathalie Dahamna, Badisse Huot, Charles Foulquié, Pierre Pereira, Suzanne Leroux, Vincent Karapetiantz, Pierre Guenegou-Arnoux, Armelle Katsahian, Sandrine Bousquet, Cédric Burgun, Anita |
author_sort | Chen, Xiaoyi |
collection | PubMed |
description | Background: The Food and Drug Administration (FDA) in the United States and the European Medicines Agency (EMA) have recognized social media as a new data source to strengthen their activities regarding drug safety. Objective: Our objective in the ADR-PRISM project was to provide text mining and visualization tools to explore a corpus of posts extracted from social media. We evaluated this approach on a corpus of 21 million posts from five patient forums, and conducted a qualitative analysis of the data available on methylphenidate in this corpus. Methods: We applied text mining methods based on named entity recognition and relation extraction in the corpus, followed by signal detection using proportional reporting ratio (PRR). We also used topic modeling based on the Correlated Topic Model to obtain the list of the matics in the corpus and classify the messages based on their topics. Results: We automatically identified 3443 posts about methylphenidate published between 2007 and 2016, among which 61 adverse drug reactions (ADR) were automatically detected. Two pharmacovigilance experts evaluated manually the quality of automatic identification, and a f-measure of 0.57 was reached. Patient's reports were mainly neuro-psychiatric effects. Applying PRR, 67% of the ADRs were signals, including most of the neuro-psychiatric symptoms but also palpitations. Topic modeling showed that the most represented topics were related to Childhood and Treatment initiation, but also Side effects. Cases of misuse were also identified in this corpus, including recreational use and abuse. Conclusion: Named entity recognition combined with signal detection and topic modeling have demonstrated their complementarity in mining social media data. An in-depth analysis focused on methylphenidate showed that this approach was able to detect potential signals and to provide better understanding of patients' behaviors regarding drugs, including misuse. |
format | Online Article Text |
id | pubmed-5978246 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-59782462018-06-07 Mining Patients' Narratives in Social Media for Pharmacovigilance: Adverse Effects and Misuse of Methylphenidate Chen, Xiaoyi Faviez, Carole Schuck, Stéphane Lillo-Le-Louët, Agnès Texier, Nathalie Dahamna, Badisse Huot, Charles Foulquié, Pierre Pereira, Suzanne Leroux, Vincent Karapetiantz, Pierre Guenegou-Arnoux, Armelle Katsahian, Sandrine Bousquet, Cédric Burgun, Anita Front Pharmacol Pharmacology Background: The Food and Drug Administration (FDA) in the United States and the European Medicines Agency (EMA) have recognized social media as a new data source to strengthen their activities regarding drug safety. Objective: Our objective in the ADR-PRISM project was to provide text mining and visualization tools to explore a corpus of posts extracted from social media. We evaluated this approach on a corpus of 21 million posts from five patient forums, and conducted a qualitative analysis of the data available on methylphenidate in this corpus. Methods: We applied text mining methods based on named entity recognition and relation extraction in the corpus, followed by signal detection using proportional reporting ratio (PRR). We also used topic modeling based on the Correlated Topic Model to obtain the list of the matics in the corpus and classify the messages based on their topics. Results: We automatically identified 3443 posts about methylphenidate published between 2007 and 2016, among which 61 adverse drug reactions (ADR) were automatically detected. Two pharmacovigilance experts evaluated manually the quality of automatic identification, and a f-measure of 0.57 was reached. Patient's reports were mainly neuro-psychiatric effects. Applying PRR, 67% of the ADRs were signals, including most of the neuro-psychiatric symptoms but also palpitations. Topic modeling showed that the most represented topics were related to Childhood and Treatment initiation, but also Side effects. Cases of misuse were also identified in this corpus, including recreational use and abuse. Conclusion: Named entity recognition combined with signal detection and topic modeling have demonstrated their complementarity in mining social media data. An in-depth analysis focused on methylphenidate showed that this approach was able to detect potential signals and to provide better understanding of patients' behaviors regarding drugs, including misuse. Frontiers Media S.A. 2018-05-24 /pmc/articles/PMC5978246/ /pubmed/29881351 http://dx.doi.org/10.3389/fphar.2018.00541 Text en Copyright © 2018 Chen, Faviez, Schuck, Lillo-Le-Louët, Texier, Dahamna, Huot, Foulquié, Pereira, Leroux, Karapetiantz, Guenegou-Arnoux, Katsahian, Bousquet and Burgun. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Pharmacology Chen, Xiaoyi Faviez, Carole Schuck, Stéphane Lillo-Le-Louët, Agnès Texier, Nathalie Dahamna, Badisse Huot, Charles Foulquié, Pierre Pereira, Suzanne Leroux, Vincent Karapetiantz, Pierre Guenegou-Arnoux, Armelle Katsahian, Sandrine Bousquet, Cédric Burgun, Anita Mining Patients' Narratives in Social Media for Pharmacovigilance: Adverse Effects and Misuse of Methylphenidate |
title | Mining Patients' Narratives in Social Media for Pharmacovigilance: Adverse Effects and Misuse of Methylphenidate |
title_full | Mining Patients' Narratives in Social Media for Pharmacovigilance: Adverse Effects and Misuse of Methylphenidate |
title_fullStr | Mining Patients' Narratives in Social Media for Pharmacovigilance: Adverse Effects and Misuse of Methylphenidate |
title_full_unstemmed | Mining Patients' Narratives in Social Media for Pharmacovigilance: Adverse Effects and Misuse of Methylphenidate |
title_short | Mining Patients' Narratives in Social Media for Pharmacovigilance: Adverse Effects and Misuse of Methylphenidate |
title_sort | mining patients' narratives in social media for pharmacovigilance: adverse effects and misuse of methylphenidate |
topic | Pharmacology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5978246/ https://www.ncbi.nlm.nih.gov/pubmed/29881351 http://dx.doi.org/10.3389/fphar.2018.00541 |
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