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Genome-wide analysis of cytochrome P450s of Trichoderma spp.: annotation and evolutionary relationships

BACKGROUND: Cytochrome P450s form an important group of enzymes involved in xenobiotics degradation and metabolism, both primary and secondary. These enzymes are also useful in industry as biotechnological tools for bioconversion and a few are reported to be involved in pathogenicity. Trichoderma sp...

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Autores principales: Chadha, Sonia, Mehetre, Sayaji T., Bansal, Ravindra, Kuo, Alan, Aerts, Andrea, Grigoriev, Igor V., Druzhinina, Irina S., Mukherjee, Prasun K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5985579/
https://www.ncbi.nlm.nih.gov/pubmed/29881631
http://dx.doi.org/10.1186/s40694-018-0056-3
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author Chadha, Sonia
Mehetre, Sayaji T.
Bansal, Ravindra
Kuo, Alan
Aerts, Andrea
Grigoriev, Igor V.
Druzhinina, Irina S.
Mukherjee, Prasun K.
author_facet Chadha, Sonia
Mehetre, Sayaji T.
Bansal, Ravindra
Kuo, Alan
Aerts, Andrea
Grigoriev, Igor V.
Druzhinina, Irina S.
Mukherjee, Prasun K.
author_sort Chadha, Sonia
collection PubMed
description BACKGROUND: Cytochrome P450s form an important group of enzymes involved in xenobiotics degradation and metabolism, both primary and secondary. These enzymes are also useful in industry as biotechnological tools for bioconversion and a few are reported to be involved in pathogenicity. Trichoderma spp. are widely used in industry and agriculture and are known for their biosynthetic potential of a large number of secondary metabolites. For realising the full biosynthetic potential of an organism, it is important to do a genome-wide annotation and cataloguing of these enzymes. RESULTS: Here, we have studied the genomes of seven species (T. asperellum, T. atroviride, T. citrinoviride, T. longibrachiatum, T. reesei , T. harzianum and T. virens) and identified a total of 477 cytochrome P450s. We present here the classification, evolution and structure as well as predicted function of these proteins. This study would pave the way for functional characterization of these groups of enzymes and will also help in realization of their full economic potential. CONCLUSION: Our CYPome annotation and evolutionary studies of the seven Trichoderma species now provides opportunities for exploration of research-driven strategies to select Trichoderma species for various applications especially in relation to secondary metabolism and degradation of environmental pollutants. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s40694-018-0056-3) contains supplementary material, which is available to authorized users.
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spelling pubmed-59855792018-06-07 Genome-wide analysis of cytochrome P450s of Trichoderma spp.: annotation and evolutionary relationships Chadha, Sonia Mehetre, Sayaji T. Bansal, Ravindra Kuo, Alan Aerts, Andrea Grigoriev, Igor V. Druzhinina, Irina S. Mukherjee, Prasun K. Fungal Biol Biotechnol Research BACKGROUND: Cytochrome P450s form an important group of enzymes involved in xenobiotics degradation and metabolism, both primary and secondary. These enzymes are also useful in industry as biotechnological tools for bioconversion and a few are reported to be involved in pathogenicity. Trichoderma spp. are widely used in industry and agriculture and are known for their biosynthetic potential of a large number of secondary metabolites. For realising the full biosynthetic potential of an organism, it is important to do a genome-wide annotation and cataloguing of these enzymes. RESULTS: Here, we have studied the genomes of seven species (T. asperellum, T. atroviride, T. citrinoviride, T. longibrachiatum, T. reesei , T. harzianum and T. virens) and identified a total of 477 cytochrome P450s. We present here the classification, evolution and structure as well as predicted function of these proteins. This study would pave the way for functional characterization of these groups of enzymes and will also help in realization of their full economic potential. CONCLUSION: Our CYPome annotation and evolutionary studies of the seven Trichoderma species now provides opportunities for exploration of research-driven strategies to select Trichoderma species for various applications especially in relation to secondary metabolism and degradation of environmental pollutants. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s40694-018-0056-3) contains supplementary material, which is available to authorized users. BioMed Central 2018-06-04 /pmc/articles/PMC5985579/ /pubmed/29881631 http://dx.doi.org/10.1186/s40694-018-0056-3 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Chadha, Sonia
Mehetre, Sayaji T.
Bansal, Ravindra
Kuo, Alan
Aerts, Andrea
Grigoriev, Igor V.
Druzhinina, Irina S.
Mukherjee, Prasun K.
Genome-wide analysis of cytochrome P450s of Trichoderma spp.: annotation and evolutionary relationships
title Genome-wide analysis of cytochrome P450s of Trichoderma spp.: annotation and evolutionary relationships
title_full Genome-wide analysis of cytochrome P450s of Trichoderma spp.: annotation and evolutionary relationships
title_fullStr Genome-wide analysis of cytochrome P450s of Trichoderma spp.: annotation and evolutionary relationships
title_full_unstemmed Genome-wide analysis of cytochrome P450s of Trichoderma spp.: annotation and evolutionary relationships
title_short Genome-wide analysis of cytochrome P450s of Trichoderma spp.: annotation and evolutionary relationships
title_sort genome-wide analysis of cytochrome p450s of trichoderma spp.: annotation and evolutionary relationships
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5985579/
https://www.ncbi.nlm.nih.gov/pubmed/29881631
http://dx.doi.org/10.1186/s40694-018-0056-3
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