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How many landmarks are enough to characterize shape and size variation?

Accurate characterization of morphological variation is crucial for generating reliable results and conclusions concerning changes and differences in form. Despite the prevalence of landmark-based geometric morphometric (GM) data in the scientific literature, a formal treatment of whether sampled la...

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Autor principal: Watanabe, Akinobu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5986137/
https://www.ncbi.nlm.nih.gov/pubmed/29864151
http://dx.doi.org/10.1371/journal.pone.0198341
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author Watanabe, Akinobu
author_facet Watanabe, Akinobu
author_sort Watanabe, Akinobu
collection PubMed
description Accurate characterization of morphological variation is crucial for generating reliable results and conclusions concerning changes and differences in form. Despite the prevalence of landmark-based geometric morphometric (GM) data in the scientific literature, a formal treatment of whether sampled landmarks adequately capture shape variation has remained elusive. Here, I introduce LaSEC (Landmark Sampling Evaluation Curve), a computational tool to assess the fidelity of morphological characterization by landmarks. This task is achieved by calculating how subsampled data converge to the pattern of shape variation in the full dataset as landmark sampling is increased incrementally. While the number of landmarks needed for adequate shape variation is dependent on individual datasets, LaSEC helps the user (1) identify under- and oversampling of landmarks; (2) assess robustness of morphological characterization; and (3) determine the number of landmarks that can be removed without compromising shape information. In practice, this knowledge could reduce time and cost associated with data collection, maintain statistical power in certain analyses, and enable the incorporation of incomplete, but important, specimens to the dataset. Results based on simulated shape data also reveal general properties of landmark data, including statistical consistency where sampling additional landmarks has the tendency to asymptotically improve the accuracy of morphological characterization. As landmark-based GM data become more widely adopted, LaSEC provides a systematic approach to evaluate and refine the collection of shape data––a goal paramount for accumulation and analysis of accurate morphological information.
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spelling pubmed-59861372018-06-16 How many landmarks are enough to characterize shape and size variation? Watanabe, Akinobu PLoS One Research Article Accurate characterization of morphological variation is crucial for generating reliable results and conclusions concerning changes and differences in form. Despite the prevalence of landmark-based geometric morphometric (GM) data in the scientific literature, a formal treatment of whether sampled landmarks adequately capture shape variation has remained elusive. Here, I introduce LaSEC (Landmark Sampling Evaluation Curve), a computational tool to assess the fidelity of morphological characterization by landmarks. This task is achieved by calculating how subsampled data converge to the pattern of shape variation in the full dataset as landmark sampling is increased incrementally. While the number of landmarks needed for adequate shape variation is dependent on individual datasets, LaSEC helps the user (1) identify under- and oversampling of landmarks; (2) assess robustness of morphological characterization; and (3) determine the number of landmarks that can be removed without compromising shape information. In practice, this knowledge could reduce time and cost associated with data collection, maintain statistical power in certain analyses, and enable the incorporation of incomplete, but important, specimens to the dataset. Results based on simulated shape data also reveal general properties of landmark data, including statistical consistency where sampling additional landmarks has the tendency to asymptotically improve the accuracy of morphological characterization. As landmark-based GM data become more widely adopted, LaSEC provides a systematic approach to evaluate and refine the collection of shape data––a goal paramount for accumulation and analysis of accurate morphological information. Public Library of Science 2018-06-04 /pmc/articles/PMC5986137/ /pubmed/29864151 http://dx.doi.org/10.1371/journal.pone.0198341 Text en © 2018 Akinobu Watanabe http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Watanabe, Akinobu
How many landmarks are enough to characterize shape and size variation?
title How many landmarks are enough to characterize shape and size variation?
title_full How many landmarks are enough to characterize shape and size variation?
title_fullStr How many landmarks are enough to characterize shape and size variation?
title_full_unstemmed How many landmarks are enough to characterize shape and size variation?
title_short How many landmarks are enough to characterize shape and size variation?
title_sort how many landmarks are enough to characterize shape and size variation?
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5986137/
https://www.ncbi.nlm.nih.gov/pubmed/29864151
http://dx.doi.org/10.1371/journal.pone.0198341
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