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Classification of healthy and diseased retina using SD-OCT imaging and Random Forest algorithm

In this paper, we propose a novel classification model for automatically identifying individuals with age-related macular degeneration (AMD) or Diabetic Macular Edema (DME) using retinal features from Spectral Domain Optical Coherence Tomography (SD-OCT) images. Our classification method uses retina...

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Autores principales: Hussain, Md Akter, Bhuiyan, Alauddin, D. Luu, Chi, Theodore Smith, R., H. Guymer, Robyn, Ishikawa, Hiroshi, S. Schuman, Joel, Ramamohanarao, Kotagiri
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5986153/
https://www.ncbi.nlm.nih.gov/pubmed/29864167
http://dx.doi.org/10.1371/journal.pone.0198281
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author Hussain, Md Akter
Bhuiyan, Alauddin
D. Luu, Chi
Theodore Smith, R.
H. Guymer, Robyn
Ishikawa, Hiroshi
S. Schuman, Joel
Ramamohanarao, Kotagiri
author_facet Hussain, Md Akter
Bhuiyan, Alauddin
D. Luu, Chi
Theodore Smith, R.
H. Guymer, Robyn
Ishikawa, Hiroshi
S. Schuman, Joel
Ramamohanarao, Kotagiri
author_sort Hussain, Md Akter
collection PubMed
description In this paper, we propose a novel classification model for automatically identifying individuals with age-related macular degeneration (AMD) or Diabetic Macular Edema (DME) using retinal features from Spectral Domain Optical Coherence Tomography (SD-OCT) images. Our classification method uses retinal features such as the thickness of the retina and the thickness of the individual retinal layers, and the volume of the pathologies such as drusen and hyper-reflective intra-retinal spots. We extract automatically, ten clinically important retinal features by segmenting individual SD-OCT images for classification purposes. The effectiveness of the extracted features is evaluated using several classification methods such as Random Forrest on 251 (59 normal, 177 AMD and 15 DME) subjects. We have performed 15-fold cross-validation tests for three phenotypes; DME, AMD and normal cases using these data sets and achieved accuracy of more than 95% on each data set with the classification method using Random Forrest. When we trained the system as a two-class problem of normal and eye with pathology, using the Random Forrest classifier, we obtained an accuracy of more than 96%. The area under the receiver operating characteristic curve (AUC) finds a value of 0.99 for each dataset. We have also shown the performance of four state-of-the-methods for classification the eye participants and found that our proposed method showed the best accuracy.
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spelling pubmed-59861532018-06-16 Classification of healthy and diseased retina using SD-OCT imaging and Random Forest algorithm Hussain, Md Akter Bhuiyan, Alauddin D. Luu, Chi Theodore Smith, R. H. Guymer, Robyn Ishikawa, Hiroshi S. Schuman, Joel Ramamohanarao, Kotagiri PLoS One Research Article In this paper, we propose a novel classification model for automatically identifying individuals with age-related macular degeneration (AMD) or Diabetic Macular Edema (DME) using retinal features from Spectral Domain Optical Coherence Tomography (SD-OCT) images. Our classification method uses retinal features such as the thickness of the retina and the thickness of the individual retinal layers, and the volume of the pathologies such as drusen and hyper-reflective intra-retinal spots. We extract automatically, ten clinically important retinal features by segmenting individual SD-OCT images for classification purposes. The effectiveness of the extracted features is evaluated using several classification methods such as Random Forrest on 251 (59 normal, 177 AMD and 15 DME) subjects. We have performed 15-fold cross-validation tests for three phenotypes; DME, AMD and normal cases using these data sets and achieved accuracy of more than 95% on each data set with the classification method using Random Forrest. When we trained the system as a two-class problem of normal and eye with pathology, using the Random Forrest classifier, we obtained an accuracy of more than 96%. The area under the receiver operating characteristic curve (AUC) finds a value of 0.99 for each dataset. We have also shown the performance of four state-of-the-methods for classification the eye participants and found that our proposed method showed the best accuracy. Public Library of Science 2018-06-04 /pmc/articles/PMC5986153/ /pubmed/29864167 http://dx.doi.org/10.1371/journal.pone.0198281 Text en © 2018 Hussain et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Hussain, Md Akter
Bhuiyan, Alauddin
D. Luu, Chi
Theodore Smith, R.
H. Guymer, Robyn
Ishikawa, Hiroshi
S. Schuman, Joel
Ramamohanarao, Kotagiri
Classification of healthy and diseased retina using SD-OCT imaging and Random Forest algorithm
title Classification of healthy and diseased retina using SD-OCT imaging and Random Forest algorithm
title_full Classification of healthy and diseased retina using SD-OCT imaging and Random Forest algorithm
title_fullStr Classification of healthy and diseased retina using SD-OCT imaging and Random Forest algorithm
title_full_unstemmed Classification of healthy and diseased retina using SD-OCT imaging and Random Forest algorithm
title_short Classification of healthy and diseased retina using SD-OCT imaging and Random Forest algorithm
title_sort classification of healthy and diseased retina using sd-oct imaging and random forest algorithm
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5986153/
https://www.ncbi.nlm.nih.gov/pubmed/29864167
http://dx.doi.org/10.1371/journal.pone.0198281
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