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Effective thresholds for reporting suspicions and improve early detection of avian influenza outbreaks in layer chickens

The objective of this study was to identify effective reporting thresholds for suspicions of both highly pathogenic (HPAI) and low pathogenic avian influenza (LPAI) outbreaks in layer farms. Daily mortality and egg-production data from 30 Dutch farms with no record of AI infection were analysed and...

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Autores principales: Gonzales, Jose L., Elbers, Armin R. W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5986775/
https://www.ncbi.nlm.nih.gov/pubmed/29867092
http://dx.doi.org/10.1038/s41598-018-26954-9
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author Gonzales, Jose L.
Elbers, Armin R. W.
author_facet Gonzales, Jose L.
Elbers, Armin R. W.
author_sort Gonzales, Jose L.
collection PubMed
description The objective of this study was to identify effective reporting thresholds for suspicions of both highly pathogenic (HPAI) and low pathogenic avian influenza (LPAI) outbreaks in layer farms. Daily mortality and egg-production data from 30 Dutch farms with no record of AI infection were analysed and thresholds set. Mortality rates above or egg-production below these thresholds for two consecutive days would trigger an alarm sign. The following thresholds were identified for mortality: (i) A mortality threshold of 0.08% or 0.13% for layers kept indoors or with free-range access respectively, (ii) a 2.9 times higher mortality than the average weekly mortality of the previous week, and iii) a moving-average threshold that could be implemented for each specific farm. For egg-production: (i) a weekly ratio lower than 0.94 in egg-production drop, and (ii) a moving-average threshold. The accuracy of these thresholds was assessed by quantifying their sensitivity, specificity and time to trigger disease detection using data from 15 infected and 31 non-infected farms. New thresholds were more sensitive and signalled infection two to six days earlier than the presently used thresholds. A high Specificity (97–100%) was obtained by combining mortality and egg production thresholds in a serial approach to trigger an alarm.
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spelling pubmed-59867752018-06-07 Effective thresholds for reporting suspicions and improve early detection of avian influenza outbreaks in layer chickens Gonzales, Jose L. Elbers, Armin R. W. Sci Rep Article The objective of this study was to identify effective reporting thresholds for suspicions of both highly pathogenic (HPAI) and low pathogenic avian influenza (LPAI) outbreaks in layer farms. Daily mortality and egg-production data from 30 Dutch farms with no record of AI infection were analysed and thresholds set. Mortality rates above or egg-production below these thresholds for two consecutive days would trigger an alarm sign. The following thresholds were identified for mortality: (i) A mortality threshold of 0.08% or 0.13% for layers kept indoors or with free-range access respectively, (ii) a 2.9 times higher mortality than the average weekly mortality of the previous week, and iii) a moving-average threshold that could be implemented for each specific farm. For egg-production: (i) a weekly ratio lower than 0.94 in egg-production drop, and (ii) a moving-average threshold. The accuracy of these thresholds was assessed by quantifying their sensitivity, specificity and time to trigger disease detection using data from 15 infected and 31 non-infected farms. New thresholds were more sensitive and signalled infection two to six days earlier than the presently used thresholds. A high Specificity (97–100%) was obtained by combining mortality and egg production thresholds in a serial approach to trigger an alarm. Nature Publishing Group UK 2018-06-04 /pmc/articles/PMC5986775/ /pubmed/29867092 http://dx.doi.org/10.1038/s41598-018-26954-9 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Gonzales, Jose L.
Elbers, Armin R. W.
Effective thresholds for reporting suspicions and improve early detection of avian influenza outbreaks in layer chickens
title Effective thresholds for reporting suspicions and improve early detection of avian influenza outbreaks in layer chickens
title_full Effective thresholds for reporting suspicions and improve early detection of avian influenza outbreaks in layer chickens
title_fullStr Effective thresholds for reporting suspicions and improve early detection of avian influenza outbreaks in layer chickens
title_full_unstemmed Effective thresholds for reporting suspicions and improve early detection of avian influenza outbreaks in layer chickens
title_short Effective thresholds for reporting suspicions and improve early detection of avian influenza outbreaks in layer chickens
title_sort effective thresholds for reporting suspicions and improve early detection of avian influenza outbreaks in layer chickens
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5986775/
https://www.ncbi.nlm.nih.gov/pubmed/29867092
http://dx.doi.org/10.1038/s41598-018-26954-9
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