Cargando…
Diagnostic value of structural and diffusion imaging measures in schizophrenia
OBJECTIVES: Many studies have attempted to discriminate patients with schizophrenia from healthy controls by machine learning using structural or functional MRI. We included both structural and diffusion MRI (dMRI) and performed random forest (RF) and support vector machine (SVM) in this study. METH...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5987843/ https://www.ncbi.nlm.nih.gov/pubmed/29876254 http://dx.doi.org/10.1016/j.nicl.2018.02.007 |
_version_ | 1783329190936838144 |
---|---|
author | Lee, Jungsun Chon, Myong-Wuk Kim, Harin Rathi, Yogesh Bouix, Sylvain Shenton, Martha E. Kubicki, Marek |
author_facet | Lee, Jungsun Chon, Myong-Wuk Kim, Harin Rathi, Yogesh Bouix, Sylvain Shenton, Martha E. Kubicki, Marek |
author_sort | Lee, Jungsun |
collection | PubMed |
description | OBJECTIVES: Many studies have attempted to discriminate patients with schizophrenia from healthy controls by machine learning using structural or functional MRI. We included both structural and diffusion MRI (dMRI) and performed random forest (RF) and support vector machine (SVM) in this study. METHODS: We evaluated the performance of classifying schizophrenia using RF method and SVM with 504 features (volume and/or fractional anisotropy and trace) from 184 brain regions. We enrolled 47 patients and 23 age- and sex-matched healthy controls and resampled our data into a balanced dataset using a Synthetic Minority Oversampling Technique method. We randomly permuted the classification of all participants as a patient or healthy control 100 times and ran the RF and SVM with leave one out cross validation for each permutation. We then compared the sensitivity and specificity of the original dataset and the permuted dataset. RESULTS: Classification using RF with 504 features showed a significantly higher rate of performance compared to classification by chance: sensitivity (87.6% vs. 47.0%) and specificity (95.9 vs. 48.4%) performed by RF, sensitivity (89.5% vs. 48.0%) and specificity (94.5% vs. 47.1%) performed by SVM. CONCLUSIONS: Machine learning using RF and SVM with both volume and diffusion measures can discriminate patients with schizophrenia with a high degree of performance. Further replications are required. |
format | Online Article Text |
id | pubmed-5987843 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-59878432018-06-06 Diagnostic value of structural and diffusion imaging measures in schizophrenia Lee, Jungsun Chon, Myong-Wuk Kim, Harin Rathi, Yogesh Bouix, Sylvain Shenton, Martha E. Kubicki, Marek Neuroimage Clin Regular Article OBJECTIVES: Many studies have attempted to discriminate patients with schizophrenia from healthy controls by machine learning using structural or functional MRI. We included both structural and diffusion MRI (dMRI) and performed random forest (RF) and support vector machine (SVM) in this study. METHODS: We evaluated the performance of classifying schizophrenia using RF method and SVM with 504 features (volume and/or fractional anisotropy and trace) from 184 brain regions. We enrolled 47 patients and 23 age- and sex-matched healthy controls and resampled our data into a balanced dataset using a Synthetic Minority Oversampling Technique method. We randomly permuted the classification of all participants as a patient or healthy control 100 times and ran the RF and SVM with leave one out cross validation for each permutation. We then compared the sensitivity and specificity of the original dataset and the permuted dataset. RESULTS: Classification using RF with 504 features showed a significantly higher rate of performance compared to classification by chance: sensitivity (87.6% vs. 47.0%) and specificity (95.9 vs. 48.4%) performed by RF, sensitivity (89.5% vs. 48.0%) and specificity (94.5% vs. 47.1%) performed by SVM. CONCLUSIONS: Machine learning using RF and SVM with both volume and diffusion measures can discriminate patients with schizophrenia with a high degree of performance. Further replications are required. Elsevier 2018-02-12 /pmc/articles/PMC5987843/ /pubmed/29876254 http://dx.doi.org/10.1016/j.nicl.2018.02.007 Text en © 2018 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Regular Article Lee, Jungsun Chon, Myong-Wuk Kim, Harin Rathi, Yogesh Bouix, Sylvain Shenton, Martha E. Kubicki, Marek Diagnostic value of structural and diffusion imaging measures in schizophrenia |
title | Diagnostic value of structural and diffusion imaging measures in schizophrenia |
title_full | Diagnostic value of structural and diffusion imaging measures in schizophrenia |
title_fullStr | Diagnostic value of structural and diffusion imaging measures in schizophrenia |
title_full_unstemmed | Diagnostic value of structural and diffusion imaging measures in schizophrenia |
title_short | Diagnostic value of structural and diffusion imaging measures in schizophrenia |
title_sort | diagnostic value of structural and diffusion imaging measures in schizophrenia |
topic | Regular Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5987843/ https://www.ncbi.nlm.nih.gov/pubmed/29876254 http://dx.doi.org/10.1016/j.nicl.2018.02.007 |
work_keys_str_mv | AT leejungsun diagnosticvalueofstructuralanddiffusionimagingmeasuresinschizophrenia AT chonmyongwuk diagnosticvalueofstructuralanddiffusionimagingmeasuresinschizophrenia AT kimharin diagnosticvalueofstructuralanddiffusionimagingmeasuresinschizophrenia AT rathiyogesh diagnosticvalueofstructuralanddiffusionimagingmeasuresinschizophrenia AT bouixsylvain diagnosticvalueofstructuralanddiffusionimagingmeasuresinschizophrenia AT shentonmarthae diagnosticvalueofstructuralanddiffusionimagingmeasuresinschizophrenia AT kubickimarek diagnosticvalueofstructuralanddiffusionimagingmeasuresinschizophrenia |