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Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages
Based on complete bacterial genome sequence data, we demonstrate a correlation between bacterial chromosome length and the G+C content of the genome, with longer genomes having higher G+C contents. The correlation value decreases at shorter genome sizes, where there is a wider spread of G+C values....
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Microbiology Society
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5989581/ https://www.ncbi.nlm.nih.gov/pubmed/29633935 http://dx.doi.org/10.1099/mgen.0.000168 |
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author | Almpanis, Apostolos Swain, Martin Gatherer, Derek McEwan, Neil |
author_facet | Almpanis, Apostolos Swain, Martin Gatherer, Derek McEwan, Neil |
author_sort | Almpanis, Apostolos |
collection | PubMed |
description | Based on complete bacterial genome sequence data, we demonstrate a correlation between bacterial chromosome length and the G+C content of the genome, with longer genomes having higher G+C contents. The correlation value decreases at shorter genome sizes, where there is a wider spread of G+C values. However, although significant (P<0.001), the correlation value (Pearson R=0.58) suggests that other factors also have a significant influence. A similar pattern was seen for plasmids; longer plasmids had higher G+C values, although the large number of shorter plasmids had a wide spread of G+C values. There was also a significant (P<0.0001) correlation between the G+C content of plasmids and the G+C content of their bacterial host. Conversely, the G+C content of bacteriophages tended to reduce with larger genome sizes, and although there was a correlation between host genome G+C content and that of the bacteriophage, it was not as strong as that seen between plasmids and their hosts. |
format | Online Article Text |
id | pubmed-5989581 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Microbiology Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-59895812018-06-12 Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages Almpanis, Apostolos Swain, Martin Gatherer, Derek McEwan, Neil Microb Genom Research Article Based on complete bacterial genome sequence data, we demonstrate a correlation between bacterial chromosome length and the G+C content of the genome, with longer genomes having higher G+C contents. The correlation value decreases at shorter genome sizes, where there is a wider spread of G+C values. However, although significant (P<0.001), the correlation value (Pearson R=0.58) suggests that other factors also have a significant influence. A similar pattern was seen for plasmids; longer plasmids had higher G+C values, although the large number of shorter plasmids had a wide spread of G+C values. There was also a significant (P<0.0001) correlation between the G+C content of plasmids and the G+C content of their bacterial host. Conversely, the G+C content of bacteriophages tended to reduce with larger genome sizes, and although there was a correlation between host genome G+C content and that of the bacteriophage, it was not as strong as that seen between plasmids and their hosts. Microbiology Society 2018-04-10 /pmc/articles/PMC5989581/ /pubmed/29633935 http://dx.doi.org/10.1099/mgen.0.000168 Text en © 2018 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Almpanis, Apostolos Swain, Martin Gatherer, Derek McEwan, Neil Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages |
title | Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages |
title_full | Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages |
title_fullStr | Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages |
title_full_unstemmed | Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages |
title_short | Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages |
title_sort | correlation between bacterial g+c content, genome size and the g+c content of associated plasmids and bacteriophages |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5989581/ https://www.ncbi.nlm.nih.gov/pubmed/29633935 http://dx.doi.org/10.1099/mgen.0.000168 |
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