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Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages

Based on complete bacterial genome sequence data, we demonstrate a correlation between bacterial chromosome length and the G+C content of the genome, with longer genomes having higher G+C contents. The correlation value decreases at shorter genome sizes, where there is a wider spread of G+C values....

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Detalles Bibliográficos
Autores principales: Almpanis, Apostolos, Swain, Martin, Gatherer, Derek, McEwan, Neil
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Microbiology Society 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5989581/
https://www.ncbi.nlm.nih.gov/pubmed/29633935
http://dx.doi.org/10.1099/mgen.0.000168
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author Almpanis, Apostolos
Swain, Martin
Gatherer, Derek
McEwan, Neil
author_facet Almpanis, Apostolos
Swain, Martin
Gatherer, Derek
McEwan, Neil
author_sort Almpanis, Apostolos
collection PubMed
description Based on complete bacterial genome sequence data, we demonstrate a correlation between bacterial chromosome length and the G+C content of the genome, with longer genomes having higher G+C contents. The correlation value decreases at shorter genome sizes, where there is a wider spread of G+C values. However, although significant (P<0.001), the correlation value (Pearson R=0.58) suggests that other factors also have a significant influence. A similar pattern was seen for plasmids; longer plasmids had higher G+C values, although the large number of shorter plasmids had a wide spread of G+C values. There was also a significant (P<0.0001) correlation between the G+C content of plasmids and the G+C content of their bacterial host. Conversely, the G+C content of bacteriophages tended to reduce with larger genome sizes, and although there was a correlation between host genome G+C content and that of the bacteriophage, it was not as strong as that seen between plasmids and their hosts.
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spelling pubmed-59895812018-06-12 Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages Almpanis, Apostolos Swain, Martin Gatherer, Derek McEwan, Neil Microb Genom Research Article Based on complete bacterial genome sequence data, we demonstrate a correlation between bacterial chromosome length and the G+C content of the genome, with longer genomes having higher G+C contents. The correlation value decreases at shorter genome sizes, where there is a wider spread of G+C values. However, although significant (P<0.001), the correlation value (Pearson R=0.58) suggests that other factors also have a significant influence. A similar pattern was seen for plasmids; longer plasmids had higher G+C values, although the large number of shorter plasmids had a wide spread of G+C values. There was also a significant (P<0.0001) correlation between the G+C content of plasmids and the G+C content of their bacterial host. Conversely, the G+C content of bacteriophages tended to reduce with larger genome sizes, and although there was a correlation between host genome G+C content and that of the bacteriophage, it was not as strong as that seen between plasmids and their hosts. Microbiology Society 2018-04-10 /pmc/articles/PMC5989581/ /pubmed/29633935 http://dx.doi.org/10.1099/mgen.0.000168 Text en © 2018 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Almpanis, Apostolos
Swain, Martin
Gatherer, Derek
McEwan, Neil
Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages
title Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages
title_full Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages
title_fullStr Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages
title_full_unstemmed Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages
title_short Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages
title_sort correlation between bacterial g+c content, genome size and the g+c content of associated plasmids and bacteriophages
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5989581/
https://www.ncbi.nlm.nih.gov/pubmed/29633935
http://dx.doi.org/10.1099/mgen.0.000168
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