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Development and characterization of 23 polymorphic microsatellite loci for Amentotaxus argotaenia (Taxaceae), a relict vulnerable species
PREMISE OF THE STUDY: New microsatellite markers were developed for the vulnerable conifer species Amentotaxus argotaenia (Taxaceae) to investigate population genetic variation and the effects of environmental heterogeneity on genetic structure. METHODS AND RESULTS: A total of 27 microsatellite loci...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991555/ https://www.ncbi.nlm.nih.gov/pubmed/30131891 http://dx.doi.org/10.1002/aps3.1149 |
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author | Huang, Qiqi Wang, Zhen Wang, Ting Su, Yingjuan |
author_facet | Huang, Qiqi Wang, Zhen Wang, Ting Su, Yingjuan |
author_sort | Huang, Qiqi |
collection | PubMed |
description | PREMISE OF THE STUDY: New microsatellite markers were developed for the vulnerable conifer species Amentotaxus argotaenia (Taxaceae) to investigate population genetic variation and the effects of environmental heterogeneity on genetic structure. METHODS AND RESULTS: A total of 27 microsatellite loci were developed from A. argotaenia through a Fast Isolation by AFLP of Sequences COntaining repeats (FIASCO) protocol, of which 23 were polymorphic. These markers yielded 1–13 alleles and 1.0–7.9 effective alleles per locus; levels of observed and expected heterozygosity varied from 0.000–1.000 and 0.000–0.873, respectively. In total, 18 of the markers were transferable to the related species A. yunnanensis. CONCLUSIONS: These polymorphic markers are a valuable genetic resource for investigating population genetic variation and the potential for local adaptation in A. argotaenia. |
format | Online Article Text |
id | pubmed-5991555 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-59915552018-08-21 Development and characterization of 23 polymorphic microsatellite loci for Amentotaxus argotaenia (Taxaceae), a relict vulnerable species Huang, Qiqi Wang, Zhen Wang, Ting Su, Yingjuan Appl Plant Sci Primer Notes PREMISE OF THE STUDY: New microsatellite markers were developed for the vulnerable conifer species Amentotaxus argotaenia (Taxaceae) to investigate population genetic variation and the effects of environmental heterogeneity on genetic structure. METHODS AND RESULTS: A total of 27 microsatellite loci were developed from A. argotaenia through a Fast Isolation by AFLP of Sequences COntaining repeats (FIASCO) protocol, of which 23 were polymorphic. These markers yielded 1–13 alleles and 1.0–7.9 effective alleles per locus; levels of observed and expected heterozygosity varied from 0.000–1.000 and 0.000–0.873, respectively. In total, 18 of the markers were transferable to the related species A. yunnanensis. CONCLUSIONS: These polymorphic markers are a valuable genetic resource for investigating population genetic variation and the potential for local adaptation in A. argotaenia. John Wiley and Sons Inc. 2018-05-23 /pmc/articles/PMC5991555/ /pubmed/30131891 http://dx.doi.org/10.1002/aps3.1149 Text en © Huang et al. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Primer Notes Huang, Qiqi Wang, Zhen Wang, Ting Su, Yingjuan Development and characterization of 23 polymorphic microsatellite loci for Amentotaxus argotaenia (Taxaceae), a relict vulnerable species |
title | Development and characterization of 23 polymorphic microsatellite loci for Amentotaxus argotaenia (Taxaceae), a relict vulnerable species |
title_full | Development and characterization of 23 polymorphic microsatellite loci for Amentotaxus argotaenia (Taxaceae), a relict vulnerable species |
title_fullStr | Development and characterization of 23 polymorphic microsatellite loci for Amentotaxus argotaenia (Taxaceae), a relict vulnerable species |
title_full_unstemmed | Development and characterization of 23 polymorphic microsatellite loci for Amentotaxus argotaenia (Taxaceae), a relict vulnerable species |
title_short | Development and characterization of 23 polymorphic microsatellite loci for Amentotaxus argotaenia (Taxaceae), a relict vulnerable species |
title_sort | development and characterization of 23 polymorphic microsatellite loci for amentotaxus argotaenia (taxaceae), a relict vulnerable species |
topic | Primer Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991555/ https://www.ncbi.nlm.nih.gov/pubmed/30131891 http://dx.doi.org/10.1002/aps3.1149 |
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