Cargando…

AptaSUITE: A Full-Featured Bioinformatics Framework for the Comprehensive Analysis of Aptamers from HT-SELEX Experiments

[Figure: see text]

Detalles Bibliográficos
Autores principales:	Hoinka, Jan, Backofen, Rolf, Przytycka, Teresa M.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Society of Gene & Cell Therapy 2018
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5992478/ https://www.ncbi.nlm.nih.gov/pubmed/29858086 http://dx.doi.org/10.1016/j.omtn.2018.04.006

Ejemplares similares

AptaGUI—A Graphical User Interface for the Efficient Analysis of HT-SELEX Data
por: Hoinka, Jan, et al.
Publicado: (2015)

Large scale analysis of the mutational landscape in HT-SELEX improves aptamer discovery
por: Hoinka, Jan, et al.
Publicado: (2015)

AptaBlocks Online: A Web-Based Toolkit for the In Silico Design of Oligonucleotide Sticky Bridges
por: Hoinka, Jan, et al.
Publicado: (2020)

AptaBlocks: Designing RNA complexes and accelerating RNA-based drug delivery systems
por: Wang, Yijie, et al.
Publicado: (2018)

Identification of LAG3 high affinity aptamers by HT-SELEX and Conserved Motif Accumulation (CMA)
por: Soldevilla, Mario Martínez, et al.
Publicado: (2017)

Identification of TIM3 2′-fluoro oligonucleotide aptamer by HT-SELEX for cancer immunotherapy
por: Hervas-Stubbs, Sandra, et al.
Publicado: (2015)

RAPID-SELEX for RNA Aptamers
por: Szeto, Kylan, et al.
Publicado: (2013)

AptaNet as a deep learning approach for aptamer–protein interaction prediction
por: Emami, Neda, et al.
Publicado: (2021)

Aptamers as the Agent in Decontamination Assays (Apta-Decontamination Assays): From the Environment to the Potential Application In Vivo
por: Bilibana, Mawethu Pascoe, et al.
Publicado: (2017)

In vivo SELEX for Identification of Brain-penetrating Aptamers
por: Cheng, Congsheng, et al.
Publicado: (2013)

RaptRanker: in silico RNA aptamer selection from HT-SELEX experiment based on local sequence and structure information
por: Ishida, Ryoga, et al.
Publicado: (2020)

Investigation of a Truncated Aptamer for Ofloxacin Detection Using a Rapid FRET-Based Apta-Assay
por: Ben Aissa, Sondes, et al.
Publicado: (2020)

AptaTrans: a deep neural network for predicting aptamer-protein interaction using pretrained encoders
por: Shin, Incheol, et al.
Publicado: (2023)

Aptamer base: a collaborative knowledge base to describe aptamers and SELEX experiments
por: Cruz-Toledo, Jose, et al.
Publicado: (2012)

Genomic SELEX: A discovery tool for genomic aptamers
por: Zimmermann, Bob, et al.
Publicado: (2010)

CELL-SELEX: Novel Perspectives of Aptamer-Based Therapeutics
por: Guo, Ke-Tai, et al.
Publicado: (2008)

Generating Aptamers by Cell-SELEX for Applications in Molecular Medicine
por: Ye, Mao, et al.
Publicado: (2012)

Capture-SELEX: Selection of DNA Aptamers for Aminoglycoside Antibiotics
por: Stoltenburg, Regina, et al.
Publicado: (2012)

Recent Advances in SELEX Technology and Aptamer Applications in Biomedicine
por: Zhuo, Zhenjian, et al.
Publicado: (2017)

An Apta-Biosensor for Colon Cancer Diagnostics
por: Ahmadzadeh Raji, Mojgan, et al.
Publicado: (2015)

Combining independent protein and cellular SELEX with bioinformatic analysis may allow high affinity aptamer hit discovery
por: Ducrot, Coline, et al.
Publicado: (2023)

Identification of malaria parasite-infected red blood cell surface aptamers by inertial microfluidic SELEX (I-SELEX)
por: Birch, Christina M., et al.
Publicado: (2015)

FSBC: fast string-based clustering for HT-SELEX data
por: Kato, Shintaro, et al.
Publicado: (2020)

Probing the Limits of Aptamer Affinity with a Microfluidic SELEX Platform
por: Ahmad, Kareem M., et al.
Publicado: (2011)

DNA Aptamer Evolved by Cell-SELEX for Recognition of Prostate Cancer
por: Wang, Yuanyuan, et al.
Publicado: (2014)

Cell-SELEX Identifies a “Sticky” RNA Aptamer Sequence
por: Ray, Partha, et al.
Publicado: (2017)

Generating Cell Targeting Aptamers for Nanotheranostics Using Cell-SELEX
por: Lyu, Yifan, et al.
Publicado: (2016)

Structure-guided post-SELEX optimization of an ochratoxin A aptamer
por: Xu, Guohua, et al.
Publicado: (2019)

Discovery of Aptamer Ligands for Hepatic Stellate Cells Using SELEX
por: Chen, Zhijin, et al.
Publicado: (2017)

Development and characterization of DNA aptamer against Retinoblastoma by Cell-SELEX
por: Maradani, Bhavani Shankar, et al.
Publicado: (2022)

SELEX: Critical factors and optimization strategies for successful aptamer selection
por: Kohlberger, Michael, et al.
Publicado: (2021)

Capture-SELEX: Selection Strategy, Aptamer Identification, and Biosensing Application
por: Lam, Sin Yu, et al.
Publicado: (2022)

Identifying high-affinity aptamer ligands with defined cross-reactivity using high-throughput guided systematic evolution of ligands by exponential enrichment
por: Levay, Agata, et al.
Publicado: (2015)

A 2′FY-RNA Motif Defines an Aptamer for Ebolavirus Secreted Protein
por: Shubham, Shambhavi, et al.
Publicado: (2018)

Bioapplications of Cell-SELEX-Generated Aptamers in Cancer Diagnostics, Therapeutics, Theranostics and Biomarker Discovery: A Comprehensive Review
por: Pang, Xuehui, et al.
Publicado: (2018)

Development of an Efficient Targeted Cell-SELEX Procedure for DNA Aptamer Reagents
por: Meyer, Susanne, et al.
Publicado: (2013)

Selection and characterization of DNA aptamer against glucagon receptor by cell-SELEX
por: Wang, Guodong, et al.
Publicado: (2017)

Real-Time PCR-Coupled CE-SELEX for DNA Aptamer Selection
por: Ruff, Patrick, et al.
Publicado: (2012)

Aptamers Against Live Targets: Is In Vivo SELEX Finally Coming to the Edge?
por: Sola, Mayte, et al.
Publicado: (2020)

Aptamer against Aflatoxin B1 Obtained by SELEX and Applied in Detection
por: Yang, Chung-Hsuan, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_si1ot3qus8rt785gj86976dh4h