Cargando…

Selection of morphological features of pollen grains for chosen tree taxa

The basis of aerobiological studies is to monitor airborne pollen concentrations and pollen season timing. This task is performed by appropriately trained staff and is difficult and time consuming. The goal of this research is to select morphological characteristics of grains that are the most discr...

Descripción completa

Detalles Bibliográficos
Autores principales: Kubik-Komar, Agnieszka, Kubera, Elżbieta, Piotrowska-Weryszko, Krystyna
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Company of Biologists Ltd 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5992530/
https://www.ncbi.nlm.nih.gov/pubmed/29643087
http://dx.doi.org/10.1242/bio.031237
_version_ 1783330049574830080
author Kubik-Komar, Agnieszka
Kubera, Elżbieta
Piotrowska-Weryszko, Krystyna
author_facet Kubik-Komar, Agnieszka
Kubera, Elżbieta
Piotrowska-Weryszko, Krystyna
author_sort Kubik-Komar, Agnieszka
collection PubMed
description The basis of aerobiological studies is to monitor airborne pollen concentrations and pollen season timing. This task is performed by appropriately trained staff and is difficult and time consuming. The goal of this research is to select morphological characteristics of grains that are the most discriminative for distinguishing between birch, hazel and alder taxa and are easy to determine automatically from microscope images. This selection is based on the split attributes of the J4.8 classification trees built for different subsets of features. Determining the discriminative features by this method, we provide specific rules for distinguishing between individual taxa, at the same time obtaining a high percentage of correct classification. The most discriminative among the 13 morphological characteristics studied are the following: number of pores, maximum axis, minimum axis, axes difference, maximum oncus width, and number of lateral pores. The classification result of the tree based on this subset is better than the one built on the whole feature set and it is almost 94%. Therefore, selection of attributes before tree building is recommended. The classification results for the features easiest to obtain from the image, i.e. maximum axis, minimum axis, axes difference, and number of lateral pores, are only 2.09 pp lower than those obtained for the complete set, but 3.23 pp lower than the results obtained for the selected most discriminating attributes only.
format Online
Article
Text
id pubmed-5992530
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher The Company of Biologists Ltd
record_format MEDLINE/PubMed
spelling pubmed-59925302018-06-08 Selection of morphological features of pollen grains for chosen tree taxa Kubik-Komar, Agnieszka Kubera, Elżbieta Piotrowska-Weryszko, Krystyna Biol Open Research Article The basis of aerobiological studies is to monitor airborne pollen concentrations and pollen season timing. This task is performed by appropriately trained staff and is difficult and time consuming. The goal of this research is to select morphological characteristics of grains that are the most discriminative for distinguishing between birch, hazel and alder taxa and are easy to determine automatically from microscope images. This selection is based on the split attributes of the J4.8 classification trees built for different subsets of features. Determining the discriminative features by this method, we provide specific rules for distinguishing between individual taxa, at the same time obtaining a high percentage of correct classification. The most discriminative among the 13 morphological characteristics studied are the following: number of pores, maximum axis, minimum axis, axes difference, maximum oncus width, and number of lateral pores. The classification result of the tree based on this subset is better than the one built on the whole feature set and it is almost 94%. Therefore, selection of attributes before tree building is recommended. The classification results for the features easiest to obtain from the image, i.e. maximum axis, minimum axis, axes difference, and number of lateral pores, are only 2.09 pp lower than those obtained for the complete set, but 3.23 pp lower than the results obtained for the selected most discriminating attributes only. The Company of Biologists Ltd 2018-04-11 /pmc/articles/PMC5992530/ /pubmed/29643087 http://dx.doi.org/10.1242/bio.031237 Text en © 2018. Published by The Company of Biologists Ltd http://creativecommons.org/licenses/by/3.0This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0), which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed.
spellingShingle Research Article
Kubik-Komar, Agnieszka
Kubera, Elżbieta
Piotrowska-Weryszko, Krystyna
Selection of morphological features of pollen grains for chosen tree taxa
title Selection of morphological features of pollen grains for chosen tree taxa
title_full Selection of morphological features of pollen grains for chosen tree taxa
title_fullStr Selection of morphological features of pollen grains for chosen tree taxa
title_full_unstemmed Selection of morphological features of pollen grains for chosen tree taxa
title_short Selection of morphological features of pollen grains for chosen tree taxa
title_sort selection of morphological features of pollen grains for chosen tree taxa
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5992530/
https://www.ncbi.nlm.nih.gov/pubmed/29643087
http://dx.doi.org/10.1242/bio.031237
work_keys_str_mv AT kubikkomaragnieszka selectionofmorphologicalfeaturesofpollengrainsforchosentreetaxa
AT kuberaelzbieta selectionofmorphologicalfeaturesofpollengrainsforchosentreetaxa
AT piotrowskaweryszkokrystyna selectionofmorphologicalfeaturesofpollengrainsforchosentreetaxa