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Large-scale database mining reveals hidden trends and future directions for cancer immunotherapy

Cancer immunotherapy has fundamentally changed the landscape of oncology in recent years and significant resources are invested into immunotherapy research. It is in the interests of researchers and clinicians to identify promising and less promising trends in this field in order to rationally alloc...

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Autores principales: Kather, Jakob Nikolas, Berghoff, Anna Sophie, Ferber, Dyke, Suarez-Carmona, Meggy, Reyes-Aldasoro, Constantino Carlos, Valous, Nektarios A., Rojas-Moraleda, Rodrigo, Jäger, Dirk, Halama, Niels
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5993505/
https://www.ncbi.nlm.nih.gov/pubmed/29900054
http://dx.doi.org/10.1080/2162402X.2018.1444412
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author Kather, Jakob Nikolas
Berghoff, Anna Sophie
Ferber, Dyke
Suarez-Carmona, Meggy
Reyes-Aldasoro, Constantino Carlos
Valous, Nektarios A.
Rojas-Moraleda, Rodrigo
Jäger, Dirk
Halama, Niels
author_facet Kather, Jakob Nikolas
Berghoff, Anna Sophie
Ferber, Dyke
Suarez-Carmona, Meggy
Reyes-Aldasoro, Constantino Carlos
Valous, Nektarios A.
Rojas-Moraleda, Rodrigo
Jäger, Dirk
Halama, Niels
author_sort Kather, Jakob Nikolas
collection PubMed
description Cancer immunotherapy has fundamentally changed the landscape of oncology in recent years and significant resources are invested into immunotherapy research. It is in the interests of researchers and clinicians to identify promising and less promising trends in this field in order to rationally allocate resources. This requires a quantitative large-scale analysis of cancer immunotherapy related databases. We developed a novel tool for text mining, statistical analysis and data visualization of scientific literature data. We used this tool to analyze 72002 cancer immunotherapy publications and 1469 clinical trials from public databases. All source codes are available under an open access license. The contribution of specific topics within the cancer immunotherapy field has markedly shifted over the years. We show that the focus is moving from cell-based therapy and vaccination towards checkpoint inhibitors, with these trends reaching statistical significance. Rapidly growing subfields include the combination of chemotherapy with checkpoint blockade. Translational studies have shifted from hematological and skin neoplasms to gastrointestinal and lung cancer and from tumor antigens and angiogenesis to tumor stroma and apoptosis. This work highlights the importance of unbiased large-scale database mining to assess trends in cancer research and cancer immunotherapy in particular. Researchers, clinicians and funding agencies should be aware of quantitative trends in the immunotherapy field, allocate resources to the most promising areas and find new approaches for currently immature topics.
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spelling pubmed-59935052018-06-13 Large-scale database mining reveals hidden trends and future directions for cancer immunotherapy Kather, Jakob Nikolas Berghoff, Anna Sophie Ferber, Dyke Suarez-Carmona, Meggy Reyes-Aldasoro, Constantino Carlos Valous, Nektarios A. Rojas-Moraleda, Rodrigo Jäger, Dirk Halama, Niels Oncoimmunology Original Research Cancer immunotherapy has fundamentally changed the landscape of oncology in recent years and significant resources are invested into immunotherapy research. It is in the interests of researchers and clinicians to identify promising and less promising trends in this field in order to rationally allocate resources. This requires a quantitative large-scale analysis of cancer immunotherapy related databases. We developed a novel tool for text mining, statistical analysis and data visualization of scientific literature data. We used this tool to analyze 72002 cancer immunotherapy publications and 1469 clinical trials from public databases. All source codes are available under an open access license. The contribution of specific topics within the cancer immunotherapy field has markedly shifted over the years. We show that the focus is moving from cell-based therapy and vaccination towards checkpoint inhibitors, with these trends reaching statistical significance. Rapidly growing subfields include the combination of chemotherapy with checkpoint blockade. Translational studies have shifted from hematological and skin neoplasms to gastrointestinal and lung cancer and from tumor antigens and angiogenesis to tumor stroma and apoptosis. This work highlights the importance of unbiased large-scale database mining to assess trends in cancer research and cancer immunotherapy in particular. Researchers, clinicians and funding agencies should be aware of quantitative trends in the immunotherapy field, allocate resources to the most promising areas and find new approaches for currently immature topics. Taylor & Francis 2018-03-29 /pmc/articles/PMC5993505/ /pubmed/29900054 http://dx.doi.org/10.1080/2162402X.2018.1444412 Text en © 2018 The Author(s). Published with license by Taylor & Francis Group, LLC http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Kather, Jakob Nikolas
Berghoff, Anna Sophie
Ferber, Dyke
Suarez-Carmona, Meggy
Reyes-Aldasoro, Constantino Carlos
Valous, Nektarios A.
Rojas-Moraleda, Rodrigo
Jäger, Dirk
Halama, Niels
Large-scale database mining reveals hidden trends and future directions for cancer immunotherapy
title Large-scale database mining reveals hidden trends and future directions for cancer immunotherapy
title_full Large-scale database mining reveals hidden trends and future directions for cancer immunotherapy
title_fullStr Large-scale database mining reveals hidden trends and future directions for cancer immunotherapy
title_full_unstemmed Large-scale database mining reveals hidden trends and future directions for cancer immunotherapy
title_short Large-scale database mining reveals hidden trends and future directions for cancer immunotherapy
title_sort large-scale database mining reveals hidden trends and future directions for cancer immunotherapy
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5993505/
https://www.ncbi.nlm.nih.gov/pubmed/29900054
http://dx.doi.org/10.1080/2162402X.2018.1444412
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