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Global miRNA expression profile reveals novel molecular players in aneurysmal subarachnoid haemorrhage
The molecular mechanisms behind aneurysmal subarachnoid haemorrhage (aSAH) are still poorly understood. Expression patterns of miRNAs may help elucidate the post-transcriptional gene expression in aSAH. Here, we evaluate the global miRNAs expression profile (miRnome) of patients with aSAH to identif...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5993784/ https://www.ncbi.nlm.nih.gov/pubmed/29884860 http://dx.doi.org/10.1038/s41598-018-27078-w |
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author | Lopes, Katia de Paiva Vinasco-Sandoval, Tatiana Vialle, Ricardo Assunção Paschoal, Fernando Mendes Bastos, Vanessa Albuquerque P. Aviz Bor-Seng-Shu, Edson Teixeira, Manoel Jacobsen Yamada, Elizabeth Sumi Pinto, Pablo Vidal, Amanda Ferreira Ribeiro-dos-Santos, Arthur Moreira, Fabiano Santos, Sidney Paschoal, Eric Homero Albuquerque Ribeiro-dos-Santos, Ândrea |
author_facet | Lopes, Katia de Paiva Vinasco-Sandoval, Tatiana Vialle, Ricardo Assunção Paschoal, Fernando Mendes Bastos, Vanessa Albuquerque P. Aviz Bor-Seng-Shu, Edson Teixeira, Manoel Jacobsen Yamada, Elizabeth Sumi Pinto, Pablo Vidal, Amanda Ferreira Ribeiro-dos-Santos, Arthur Moreira, Fabiano Santos, Sidney Paschoal, Eric Homero Albuquerque Ribeiro-dos-Santos, Ândrea |
author_sort | Lopes, Katia de Paiva |
collection | PubMed |
description | The molecular mechanisms behind aneurysmal subarachnoid haemorrhage (aSAH) are still poorly understood. Expression patterns of miRNAs may help elucidate the post-transcriptional gene expression in aSAH. Here, we evaluate the global miRNAs expression profile (miRnome) of patients with aSAH to identify potential biomarkers. We collected 33 peripheral blood samples (27 patients with cerebral aneurysm, collected 7 to 10 days after the haemorrhage, when usually is the cerebral vasospasm risk peak, and six controls). Then, were performed small RNA sequencing using an Illumina Next Generation Sequencing (NGS) platform. Differential expression analysis identified eight differentially expressed miRNAs. Among them, three were identified being up-regulated, and five down-regulated. miR-486-5p was the most abundant expressed and is associated with poor neurological admission status. In silico miRNA gene target prediction showed 148 genes associated with at least two differentially expressed miRNAs. Among these, THBS1 and VEGFA, known to be related to thrombospondin and vascular endothelial growth factor. Moreover, MYC gene was found to be regulated by four miRNAs, suggesting an important role in aneurysmal subarachnoid haemorrhage. Additionally, 15 novel miRNAs were predicted being expressed only in aSAH, suggesting possible involvement in aneurysm pathogenesis. These findings may help the identification of novel biomarkers of clinical interest. |
format | Online Article Text |
id | pubmed-5993784 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-59937842018-06-21 Global miRNA expression profile reveals novel molecular players in aneurysmal subarachnoid haemorrhage Lopes, Katia de Paiva Vinasco-Sandoval, Tatiana Vialle, Ricardo Assunção Paschoal, Fernando Mendes Bastos, Vanessa Albuquerque P. Aviz Bor-Seng-Shu, Edson Teixeira, Manoel Jacobsen Yamada, Elizabeth Sumi Pinto, Pablo Vidal, Amanda Ferreira Ribeiro-dos-Santos, Arthur Moreira, Fabiano Santos, Sidney Paschoal, Eric Homero Albuquerque Ribeiro-dos-Santos, Ândrea Sci Rep Article The molecular mechanisms behind aneurysmal subarachnoid haemorrhage (aSAH) are still poorly understood. Expression patterns of miRNAs may help elucidate the post-transcriptional gene expression in aSAH. Here, we evaluate the global miRNAs expression profile (miRnome) of patients with aSAH to identify potential biomarkers. We collected 33 peripheral blood samples (27 patients with cerebral aneurysm, collected 7 to 10 days after the haemorrhage, when usually is the cerebral vasospasm risk peak, and six controls). Then, were performed small RNA sequencing using an Illumina Next Generation Sequencing (NGS) platform. Differential expression analysis identified eight differentially expressed miRNAs. Among them, three were identified being up-regulated, and five down-regulated. miR-486-5p was the most abundant expressed and is associated with poor neurological admission status. In silico miRNA gene target prediction showed 148 genes associated with at least two differentially expressed miRNAs. Among these, THBS1 and VEGFA, known to be related to thrombospondin and vascular endothelial growth factor. Moreover, MYC gene was found to be regulated by four miRNAs, suggesting an important role in aneurysmal subarachnoid haemorrhage. Additionally, 15 novel miRNAs were predicted being expressed only in aSAH, suggesting possible involvement in aneurysm pathogenesis. These findings may help the identification of novel biomarkers of clinical interest. Nature Publishing Group UK 2018-06-08 /pmc/articles/PMC5993784/ /pubmed/29884860 http://dx.doi.org/10.1038/s41598-018-27078-w Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Lopes, Katia de Paiva Vinasco-Sandoval, Tatiana Vialle, Ricardo Assunção Paschoal, Fernando Mendes Bastos, Vanessa Albuquerque P. Aviz Bor-Seng-Shu, Edson Teixeira, Manoel Jacobsen Yamada, Elizabeth Sumi Pinto, Pablo Vidal, Amanda Ferreira Ribeiro-dos-Santos, Arthur Moreira, Fabiano Santos, Sidney Paschoal, Eric Homero Albuquerque Ribeiro-dos-Santos, Ândrea Global miRNA expression profile reveals novel molecular players in aneurysmal subarachnoid haemorrhage |
title | Global miRNA expression profile reveals novel molecular players in aneurysmal subarachnoid haemorrhage |
title_full | Global miRNA expression profile reveals novel molecular players in aneurysmal subarachnoid haemorrhage |
title_fullStr | Global miRNA expression profile reveals novel molecular players in aneurysmal subarachnoid haemorrhage |
title_full_unstemmed | Global miRNA expression profile reveals novel molecular players in aneurysmal subarachnoid haemorrhage |
title_short | Global miRNA expression profile reveals novel molecular players in aneurysmal subarachnoid haemorrhage |
title_sort | global mirna expression profile reveals novel molecular players in aneurysmal subarachnoid haemorrhage |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5993784/ https://www.ncbi.nlm.nih.gov/pubmed/29884860 http://dx.doi.org/10.1038/s41598-018-27078-w |
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