Cargando…
Time-varying MVAR algorithms for directed connectivity analysis: Critical comparison in simulations and benchmark EEG data
Human brain function depends on directed interactions between multiple areas that evolve in the subsecond range. Time-varying multivariate autoregressive (tvMVAR) modeling has been proposed as a way to help quantify directed functional connectivity strengths with high temporal resolution. While seve...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5995381/ https://www.ncbi.nlm.nih.gov/pubmed/29889883 http://dx.doi.org/10.1371/journal.pone.0198846 |
_version_ | 1783330607840886784 |
---|---|
author | Pagnotta, Mattia F. Plomp, Gijs |
author_facet | Pagnotta, Mattia F. Plomp, Gijs |
author_sort | Pagnotta, Mattia F. |
collection | PubMed |
description | Human brain function depends on directed interactions between multiple areas that evolve in the subsecond range. Time-varying multivariate autoregressive (tvMVAR) modeling has been proposed as a way to help quantify directed functional connectivity strengths with high temporal resolution. While several tvMVAR approaches are currently available, there is a lack of unbiased systematic comparative analyses of their performance and of their sensitivity to parameter choices. Here, we critically compare four recursive tvMVAR algorithms and assess their performance while systematically varying adaptation coefficients, model order, and signal sampling rate. We also compared two ways of exploiting repeated observations: single-trial modeling followed by averaging, and multi-trial modeling where one tvMVAR model is fitted across all trials. Results from numerical simulations and from benchmark EEG recordings showed that: i) across a broad range of model orders all algorithms correctly reproduced patterns of interactions; ii) signal downsampling degraded connectivity estimation accuracy for most algorithms, although in some cases downsampling was shown to reduce variability in the estimates by lowering the number of parameters in the model; iii) single-trial modeling followed by averaging showed optimal performance with larger adaptation coefficients than previously suggested, and showed slower adaptation speeds than multi-trial modeling. Overall, our findings identify strengths and weaknesses of existing tvMVAR approaches and provide practical recommendations for their application to modeling dynamic directed interactions from electrophysiological signals. |
format | Online Article Text |
id | pubmed-5995381 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-59953812018-06-21 Time-varying MVAR algorithms for directed connectivity analysis: Critical comparison in simulations and benchmark EEG data Pagnotta, Mattia F. Plomp, Gijs PLoS One Research Article Human brain function depends on directed interactions between multiple areas that evolve in the subsecond range. Time-varying multivariate autoregressive (tvMVAR) modeling has been proposed as a way to help quantify directed functional connectivity strengths with high temporal resolution. While several tvMVAR approaches are currently available, there is a lack of unbiased systematic comparative analyses of their performance and of their sensitivity to parameter choices. Here, we critically compare four recursive tvMVAR algorithms and assess their performance while systematically varying adaptation coefficients, model order, and signal sampling rate. We also compared two ways of exploiting repeated observations: single-trial modeling followed by averaging, and multi-trial modeling where one tvMVAR model is fitted across all trials. Results from numerical simulations and from benchmark EEG recordings showed that: i) across a broad range of model orders all algorithms correctly reproduced patterns of interactions; ii) signal downsampling degraded connectivity estimation accuracy for most algorithms, although in some cases downsampling was shown to reduce variability in the estimates by lowering the number of parameters in the model; iii) single-trial modeling followed by averaging showed optimal performance with larger adaptation coefficients than previously suggested, and showed slower adaptation speeds than multi-trial modeling. Overall, our findings identify strengths and weaknesses of existing tvMVAR approaches and provide practical recommendations for their application to modeling dynamic directed interactions from electrophysiological signals. Public Library of Science 2018-06-11 /pmc/articles/PMC5995381/ /pubmed/29889883 http://dx.doi.org/10.1371/journal.pone.0198846 Text en © 2018 Pagnotta, Plomp http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Pagnotta, Mattia F. Plomp, Gijs Time-varying MVAR algorithms for directed connectivity analysis: Critical comparison in simulations and benchmark EEG data |
title | Time-varying MVAR algorithms for directed connectivity analysis: Critical comparison in simulations and benchmark EEG data |
title_full | Time-varying MVAR algorithms for directed connectivity analysis: Critical comparison in simulations and benchmark EEG data |
title_fullStr | Time-varying MVAR algorithms for directed connectivity analysis: Critical comparison in simulations and benchmark EEG data |
title_full_unstemmed | Time-varying MVAR algorithms for directed connectivity analysis: Critical comparison in simulations and benchmark EEG data |
title_short | Time-varying MVAR algorithms for directed connectivity analysis: Critical comparison in simulations and benchmark EEG data |
title_sort | time-varying mvar algorithms for directed connectivity analysis: critical comparison in simulations and benchmark eeg data |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5995381/ https://www.ncbi.nlm.nih.gov/pubmed/29889883 http://dx.doi.org/10.1371/journal.pone.0198846 |
work_keys_str_mv | AT pagnottamattiaf timevaryingmvaralgorithmsfordirectedconnectivityanalysiscriticalcomparisoninsimulationsandbenchmarkeegdata AT plompgijs timevaryingmvaralgorithmsfordirectedconnectivityanalysiscriticalcomparisoninsimulationsandbenchmarkeegdata |