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Calculation and plotting of retinal nerve fiber paths based on Jansonius et al. 2009/2012 with an R program

The data presented in this article are related to the research article entitled “Retinal conduction speed analysis reveals different origins of the P50 and N95 components of the (multifocal) pattern electroretinogram” (Bach et al., 2018) [1]. That analysis required the individual length data of the...

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Autores principales: Bach, M., Hoffmann, M.B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5995751/
https://www.ncbi.nlm.nih.gov/pubmed/29896492
http://dx.doi.org/10.1016/j.dib.2018.02.065
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author Bach, M.
Hoffmann, M.B.
author_facet Bach, M.
Hoffmann, M.B.
author_sort Bach, M.
collection PubMed
description The data presented in this article are related to the research article entitled “Retinal conduction speed analysis reveals different origins of the P50 and N95 components of the (multifocal) pattern electroretinogram” (Bach et al., 2018) [1]. That analysis required the individual length data of the retinal nerve fibers (from ganglion cell body to optic nerve head, depending on the position of the ganglion cell body). Jansonius et al. (2009, 2012) [2,3] mathematically modeled the path morphology of the human retinal nerve fibers. We here present a working implementation with source code (for the free and open-source programming environment “R”) of the Jansonius’ formulas, including all errata. One file defines Jansonius et al.’s “phi” function. This function allows quantitative modelling of paths (and any measures derived from them) of the retinal nerve fibers. As a working demonstration, a second file contains a graph which plots samples of nerve fibers. The included R code runs in base R without the need of any additional packages.
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spelling pubmed-59957512018-06-12 Calculation and plotting of retinal nerve fiber paths based on Jansonius et al. 2009/2012 with an R program Bach, M. Hoffmann, M.B. Data Brief Neurosciences    The data presented in this article are related to the research article entitled “Retinal conduction speed analysis reveals different origins of the P50 and N95 components of the (multifocal) pattern electroretinogram” (Bach et al., 2018) [1]. That analysis required the individual length data of the retinal nerve fibers (from ganglion cell body to optic nerve head, depending on the position of the ganglion cell body). Jansonius et al. (2009, 2012) [2,3] mathematically modeled the path morphology of the human retinal nerve fibers. We here present a working implementation with source code (for the free and open-source programming environment “R”) of the Jansonius’ formulas, including all errata. One file defines Jansonius et al.’s “phi” function. This function allows quantitative modelling of paths (and any measures derived from them) of the retinal nerve fibers. As a working demonstration, a second file contains a graph which plots samples of nerve fibers. The included R code runs in base R without the need of any additional packages. Elsevier 2018-02-28 /pmc/articles/PMC5995751/ /pubmed/29896492 http://dx.doi.org/10.1016/j.dib.2018.02.065 Text en © 2018 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Neurosciences   
Bach, M.
Hoffmann, M.B.
Calculation and plotting of retinal nerve fiber paths based on Jansonius et al. 2009/2012 with an R program
title Calculation and plotting of retinal nerve fiber paths based on Jansonius et al. 2009/2012 with an R program
title_full Calculation and plotting of retinal nerve fiber paths based on Jansonius et al. 2009/2012 with an R program
title_fullStr Calculation and plotting of retinal nerve fiber paths based on Jansonius et al. 2009/2012 with an R program
title_full_unstemmed Calculation and plotting of retinal nerve fiber paths based on Jansonius et al. 2009/2012 with an R program
title_short Calculation and plotting of retinal nerve fiber paths based on Jansonius et al. 2009/2012 with an R program
title_sort calculation and plotting of retinal nerve fiber paths based on jansonius et al. 2009/2012 with an r program
topic Neurosciences   
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5995751/
https://www.ncbi.nlm.nih.gov/pubmed/29896492
http://dx.doi.org/10.1016/j.dib.2018.02.065
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