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A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci

Primary open-angle glaucoma (POAG) is a leading cause of irreversible vision loss, yet much of the genetic risk remains unaccounted for, especially in African-Americans who have a higher risk for developing POAG. We conduct a multiethnic genome-wide association study (GWAS) of POAG in the GERA cohor...

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Autores principales: Choquet, Hélène, Paylakhi, Seyyedhassan, Kneeland, Stephen C., Thai, Khanh K., Hoffmann, Thomas J., Yin, Jie, Kvale, Mark N., Banda, Yambazi, Tolman, Nicholas G., Williams, Pete A., Schaefer, Catherine, Melles, Ronald B., Risch, Neil, John, Simon W. M., Nair, K. Saidas, Jorgenson, Eric
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5995837/
https://www.ncbi.nlm.nih.gov/pubmed/29891935
http://dx.doi.org/10.1038/s41467-018-04555-4
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author Choquet, Hélène
Paylakhi, Seyyedhassan
Kneeland, Stephen C.
Thai, Khanh K.
Hoffmann, Thomas J.
Yin, Jie
Kvale, Mark N.
Banda, Yambazi
Tolman, Nicholas G.
Williams, Pete A.
Schaefer, Catherine
Melles, Ronald B.
Risch, Neil
John, Simon W. M.
Nair, K. Saidas
Jorgenson, Eric
author_facet Choquet, Hélène
Paylakhi, Seyyedhassan
Kneeland, Stephen C.
Thai, Khanh K.
Hoffmann, Thomas J.
Yin, Jie
Kvale, Mark N.
Banda, Yambazi
Tolman, Nicholas G.
Williams, Pete A.
Schaefer, Catherine
Melles, Ronald B.
Risch, Neil
John, Simon W. M.
Nair, K. Saidas
Jorgenson, Eric
author_sort Choquet, Hélène
collection PubMed
description Primary open-angle glaucoma (POAG) is a leading cause of irreversible vision loss, yet much of the genetic risk remains unaccounted for, especially in African-Americans who have a higher risk for developing POAG. We conduct a multiethnic genome-wide association study (GWAS) of POAG in the GERA cohort, with replication in the UK Biobank (UKB), and vice versa, GWAS in UKB with replication in GERA. We identify 24 loci (P < 5.0 × 10(−8)), including 14 novel, of which 9 replicate (near FMNL2, PDE7B, TMTC2, IKZF2, CADM2, DGKG, ANKH, EXOC2, and LMX1B). Functional studies support intraocular pressure-related influences of FMNL2 and LMX1B, with certain Lmx1b mutations causing high IOP and glaucoma resembling POAG in mice. The newly identified loci increase the proportion of variance explained in each GERA race/ethnicity group, with the largest gain in African-Americans (0.5–3.1%). A meta-analysis combining GERA and UKB identifies 24 additional loci. Our study provides important insights into glaucoma pathogenesis.
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spelling pubmed-59958372018-06-13 A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci Choquet, Hélène Paylakhi, Seyyedhassan Kneeland, Stephen C. Thai, Khanh K. Hoffmann, Thomas J. Yin, Jie Kvale, Mark N. Banda, Yambazi Tolman, Nicholas G. Williams, Pete A. Schaefer, Catherine Melles, Ronald B. Risch, Neil John, Simon W. M. Nair, K. Saidas Jorgenson, Eric Nat Commun Article Primary open-angle glaucoma (POAG) is a leading cause of irreversible vision loss, yet much of the genetic risk remains unaccounted for, especially in African-Americans who have a higher risk for developing POAG. We conduct a multiethnic genome-wide association study (GWAS) of POAG in the GERA cohort, with replication in the UK Biobank (UKB), and vice versa, GWAS in UKB with replication in GERA. We identify 24 loci (P < 5.0 × 10(−8)), including 14 novel, of which 9 replicate (near FMNL2, PDE7B, TMTC2, IKZF2, CADM2, DGKG, ANKH, EXOC2, and LMX1B). Functional studies support intraocular pressure-related influences of FMNL2 and LMX1B, with certain Lmx1b mutations causing high IOP and glaucoma resembling POAG in mice. The newly identified loci increase the proportion of variance explained in each GERA race/ethnicity group, with the largest gain in African-Americans (0.5–3.1%). A meta-analysis combining GERA and UKB identifies 24 additional loci. Our study provides important insights into glaucoma pathogenesis. Nature Publishing Group UK 2018-06-11 /pmc/articles/PMC5995837/ /pubmed/29891935 http://dx.doi.org/10.1038/s41467-018-04555-4 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Choquet, Hélène
Paylakhi, Seyyedhassan
Kneeland, Stephen C.
Thai, Khanh K.
Hoffmann, Thomas J.
Yin, Jie
Kvale, Mark N.
Banda, Yambazi
Tolman, Nicholas G.
Williams, Pete A.
Schaefer, Catherine
Melles, Ronald B.
Risch, Neil
John, Simon W. M.
Nair, K. Saidas
Jorgenson, Eric
A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci
title A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci
title_full A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci
title_fullStr A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci
title_full_unstemmed A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci
title_short A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci
title_sort multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5995837/
https://www.ncbi.nlm.nih.gov/pubmed/29891935
http://dx.doi.org/10.1038/s41467-018-04555-4
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