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Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean
Identification of microorganisms plays a key role in the determination of the composition of microbial diversity for bioprospecting of biotechnologically important biomolecules. Digitalization is the process that solve discrepancies in microbial identification and cataloguing their diversity in dist...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5996221/ https://www.ncbi.nlm.nih.gov/pubmed/29896530 http://dx.doi.org/10.1016/j.dib.2018.03.014 |
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author | Sivasankar, Palaniappan Rekadwad, Bhagwan Poongodi, Subramaniam Sivakumar, Kannan Venkateswaran Parli, Bhaskar Kumar, N. Anil |
author_facet | Sivasankar, Palaniappan Rekadwad, Bhagwan Poongodi, Subramaniam Sivakumar, Kannan Venkateswaran Parli, Bhaskar Kumar, N. Anil |
author_sort | Sivasankar, Palaniappan |
collection | PubMed |
description | Identification of microorganisms plays a key role in the determination of the composition of microbial diversity for bioprospecting of biotechnologically important biomolecules. Digitalization is the process that solve discrepancies in microbial identification and cataloguing their diversity in distinct ecological habitats. In view of this connection, the psychrophilic and psychrotolerant actinobacteria were isolated from the water samples of the Polar Frontal region of the Southern Ocean. 16S rRNA gene sequencing for identification of psychrophiles was carried out and sequences were deposited in NCBI GeneBank. 16S rRNA gene sequences were used to create QR codes, CGR, FCGR and GC plot. This generated digital data help to relate the diversity amongst the isolated actinobacterial strains. The digital data showed considerable divergence among the actinobacterial strains. This generated bioinformatics data is helpful in the delimitation of the psychrophilic and psychrotolerant actinobacteria. Thus, the present study is a robust and accurate method for the identification of Polar microorganisms in a fixed boundary. Hence, this work will help to assign a unique digital identity to microorganisms in near future [9-19]. |
format | Online Article Text |
id | pubmed-5996221 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-59962212018-06-12 Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean Sivasankar, Palaniappan Rekadwad, Bhagwan Poongodi, Subramaniam Sivakumar, Kannan Venkateswaran Parli, Bhaskar Kumar, N. Anil Data Brief Environmental Sciences Identification of microorganisms plays a key role in the determination of the composition of microbial diversity for bioprospecting of biotechnologically important biomolecules. Digitalization is the process that solve discrepancies in microbial identification and cataloguing their diversity in distinct ecological habitats. In view of this connection, the psychrophilic and psychrotolerant actinobacteria were isolated from the water samples of the Polar Frontal region of the Southern Ocean. 16S rRNA gene sequencing for identification of psychrophiles was carried out and sequences were deposited in NCBI GeneBank. 16S rRNA gene sequences were used to create QR codes, CGR, FCGR and GC plot. This generated digital data help to relate the diversity amongst the isolated actinobacterial strains. The digital data showed considerable divergence among the actinobacterial strains. This generated bioinformatics data is helpful in the delimitation of the psychrophilic and psychrotolerant actinobacteria. Thus, the present study is a robust and accurate method for the identification of Polar microorganisms in a fixed boundary. Hence, this work will help to assign a unique digital identity to microorganisms in near future [9-19]. Elsevier 2018-03-08 /pmc/articles/PMC5996221/ /pubmed/29896530 http://dx.doi.org/10.1016/j.dib.2018.03.014 Text en © 2018 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Environmental Sciences Sivasankar, Palaniappan Rekadwad, Bhagwan Poongodi, Subramaniam Sivakumar, Kannan Venkateswaran Parli, Bhaskar Kumar, N. Anil Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean |
title | Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean |
title_full | Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean |
title_fullStr | Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean |
title_full_unstemmed | Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean |
title_short | Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean |
title_sort | bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the polar frontal waters of the southern ocean |
topic | Environmental Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5996221/ https://www.ncbi.nlm.nih.gov/pubmed/29896530 http://dx.doi.org/10.1016/j.dib.2018.03.014 |
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