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Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean

Identification of microorganisms plays a key role in the determination of the composition of microbial diversity for bioprospecting of biotechnologically important biomolecules. Digitalization is the process that solve discrepancies in microbial identification and cataloguing their diversity in dist...

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Autores principales: Sivasankar, Palaniappan, Rekadwad, Bhagwan, Poongodi, Subramaniam, Sivakumar, Kannan, Venkateswaran Parli, Bhaskar, Kumar, N. Anil
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5996221/
https://www.ncbi.nlm.nih.gov/pubmed/29896530
http://dx.doi.org/10.1016/j.dib.2018.03.014
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author Sivasankar, Palaniappan
Rekadwad, Bhagwan
Poongodi, Subramaniam
Sivakumar, Kannan
Venkateswaran Parli, Bhaskar
Kumar, N. Anil
author_facet Sivasankar, Palaniappan
Rekadwad, Bhagwan
Poongodi, Subramaniam
Sivakumar, Kannan
Venkateswaran Parli, Bhaskar
Kumar, N. Anil
author_sort Sivasankar, Palaniappan
collection PubMed
description Identification of microorganisms plays a key role in the determination of the composition of microbial diversity for bioprospecting of biotechnologically important biomolecules. Digitalization is the process that solve discrepancies in microbial identification and cataloguing their diversity in distinct ecological habitats. In view of this connection, the psychrophilic and psychrotolerant actinobacteria were isolated from the water samples of the Polar Frontal region of the Southern Ocean. 16S rRNA gene sequencing for identification of psychrophiles was carried out and sequences were deposited in NCBI GeneBank. 16S rRNA gene sequences were used to create QR codes, CGR, FCGR and GC plot. This generated digital data help to relate the diversity amongst the isolated actinobacterial strains. The digital data showed considerable divergence among the actinobacterial strains. This generated bioinformatics data is helpful in the delimitation of the psychrophilic and psychrotolerant actinobacteria. Thus, the present study is a robust and accurate method for the identification of Polar microorganisms in a fixed boundary. Hence, this work will help to assign a unique digital identity to microorganisms in near future [9-19].
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spelling pubmed-59962212018-06-12 Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean Sivasankar, Palaniappan Rekadwad, Bhagwan Poongodi, Subramaniam Sivakumar, Kannan Venkateswaran Parli, Bhaskar Kumar, N. Anil Data Brief Environmental Sciences    Identification of microorganisms plays a key role in the determination of the composition of microbial diversity for bioprospecting of biotechnologically important biomolecules. Digitalization is the process that solve discrepancies in microbial identification and cataloguing their diversity in distinct ecological habitats. In view of this connection, the psychrophilic and psychrotolerant actinobacteria were isolated from the water samples of the Polar Frontal region of the Southern Ocean. 16S rRNA gene sequencing for identification of psychrophiles was carried out and sequences were deposited in NCBI GeneBank. 16S rRNA gene sequences were used to create QR codes, CGR, FCGR and GC plot. This generated digital data help to relate the diversity amongst the isolated actinobacterial strains. The digital data showed considerable divergence among the actinobacterial strains. This generated bioinformatics data is helpful in the delimitation of the psychrophilic and psychrotolerant actinobacteria. Thus, the present study is a robust and accurate method for the identification of Polar microorganisms in a fixed boundary. Hence, this work will help to assign a unique digital identity to microorganisms in near future [9-19]. Elsevier 2018-03-08 /pmc/articles/PMC5996221/ /pubmed/29896530 http://dx.doi.org/10.1016/j.dib.2018.03.014 Text en © 2018 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Environmental Sciences   
Sivasankar, Palaniappan
Rekadwad, Bhagwan
Poongodi, Subramaniam
Sivakumar, Kannan
Venkateswaran Parli, Bhaskar
Kumar, N. Anil
Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean
title Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean
title_full Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean
title_fullStr Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean
title_full_unstemmed Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean
title_short Bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the Polar Frontal waters of the Southern Ocean
title_sort bioinformatics delimitation of the psychrophilic and psychrotolerant actinobacteria isolated from the polar frontal waters of the southern ocean
topic Environmental Sciences   
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5996221/
https://www.ncbi.nlm.nih.gov/pubmed/29896530
http://dx.doi.org/10.1016/j.dib.2018.03.014
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