RNA-seq data of invasive ductal carcinoma and adjacent normal tissues from a Korean patient with breast cancer

Invasive ductal carcinoma is the most common type of breast cancer. Here, we provide a whole transcriptome shotgun sequencing (called RNA-seq) dataset conducted with ten samples of invasive ductal carcinoma tissue and three samples of adjacent normal tissue from a single Korean breast cancer patient...

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Autores principales: Hong, Ji Hyung, Ko, Yoon Ho, Kang, Keunsoo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Genetics, Genomics and Molecular Biology   
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5996721/
https://www.ncbi.nlm.nih.gov/pubmed/29900229
http://dx.doi.org/10.1016/j.dib.2018.03.079
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author Hong, Ji Hyung
Ko, Yoon Ho
Kang, Keunsoo
author_facet Hong, Ji Hyung
Ko, Yoon Ho
Kang, Keunsoo
author_sort Hong, Ji Hyung
collection PubMed
description Invasive ductal carcinoma is the most common type of breast cancer. Here, we provide a whole transcriptome shotgun sequencing (called RNA-seq) dataset conducted with ten samples of invasive ductal carcinoma tissue and three samples of adjacent normal tissue from a single Korean breast cancer patient (luminal B subtype). Differentially expressed genes (DEGs) were identified with a false discovery rate (FDR)-adjusted p-value of 0.05. Gene ontology analysis identified several key pathways, including lymphocyte activation. A list of differentially expressed genes is provided. The raw data was uploaded to the sequence read archive (SRA) database and the BioProject ID is PRJNA432903.
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spelling pubmed-59967212018-06-13 RNA-seq data of invasive ductal carcinoma and adjacent normal tissues from a Korean patient with breast cancer Hong, Ji Hyung Ko, Yoon Ho Kang, Keunsoo Data Brief Genetics, Genomics and Molecular Biology    Invasive ductal carcinoma is the most common type of breast cancer. Here, we provide a whole transcriptome shotgun sequencing (called RNA-seq) dataset conducted with ten samples of invasive ductal carcinoma tissue and three samples of adjacent normal tissue from a single Korean breast cancer patient (luminal B subtype). Differentially expressed genes (DEGs) were identified with a false discovery rate (FDR)-adjusted p-value of 0.05. Gene ontology analysis identified several key pathways, including lymphocyte activation. A list of differentially expressed genes is provided. The raw data was uploaded to the sequence read archive (SRA) database and the BioProject ID is PRJNA432903. Elsevier 2018-03-21 /pmc/articles/PMC5996721/ /pubmed/29900229 http://dx.doi.org/10.1016/j.dib.2018.03.079 Text en © 2018 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Genetics, Genomics and Molecular Biology   
Hong, Ji Hyung
Ko, Yoon Ho
Kang, Keunsoo
RNA-seq data of invasive ductal carcinoma and adjacent normal tissues from a Korean patient with breast cancer
title RNA-seq data of invasive ductal carcinoma and adjacent normal tissues from a Korean patient with breast cancer
title_full RNA-seq data of invasive ductal carcinoma and adjacent normal tissues from a Korean patient with breast cancer
title_fullStr RNA-seq data of invasive ductal carcinoma and adjacent normal tissues from a Korean patient with breast cancer
title_full_unstemmed RNA-seq data of invasive ductal carcinoma and adjacent normal tissues from a Korean patient with breast cancer
title_short RNA-seq data of invasive ductal carcinoma and adjacent normal tissues from a Korean patient with breast cancer
title_sort rna-seq data of invasive ductal carcinoma and adjacent normal tissues from a korean patient with breast cancer
topic Genetics, Genomics and Molecular Biology   
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5996721/
https://www.ncbi.nlm.nih.gov/pubmed/29900229
http://dx.doi.org/10.1016/j.dib.2018.03.079
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