Cargando…

Modeling Chronic Toxicity: A Comparison of Experimental Variability With (Q)SAR/Read-Across Predictions

This study compares the accuracy of (Q)SAR/read-across predictions with the experimental variability of chronic lowest-observed-adverse-effect levels (LOAELs) from in vivo experiments. We could demonstrate that predictions of the lazy structure-activity relationships (lazar) algorithm within the app...

Descripción completa

Detalles Bibliográficos
Autores principales: Helma, Christoph, Vorgrimmler, David, Gebele, Denis, Gütlein, Martin, Engeli, Barbara, Zarn, Jürg, Schilter, Benoit, Lo Piparo, Elena
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5996880/
https://www.ncbi.nlm.nih.gov/pubmed/29922154
http://dx.doi.org/10.3389/fphar.2018.00413
_version_ 1783330961338925056
author Helma, Christoph
Vorgrimmler, David
Gebele, Denis
Gütlein, Martin
Engeli, Barbara
Zarn, Jürg
Schilter, Benoit
Lo Piparo, Elena
author_facet Helma, Christoph
Vorgrimmler, David
Gebele, Denis
Gütlein, Martin
Engeli, Barbara
Zarn, Jürg
Schilter, Benoit
Lo Piparo, Elena
author_sort Helma, Christoph
collection PubMed
description This study compares the accuracy of (Q)SAR/read-across predictions with the experimental variability of chronic lowest-observed-adverse-effect levels (LOAELs) from in vivo experiments. We could demonstrate that predictions of the lazy structure-activity relationships (lazar) algorithm within the applicability domain of the training data have the same variability as the experimental training data. Predictions with a lower similarity threshold (i.e., a larger distance from the applicability domain) are also significantly better than random guessing, but the errors to be expected are higher and a manual inspection of prediction results is highly recommended.
format Online
Article
Text
id pubmed-5996880
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-59968802018-06-19 Modeling Chronic Toxicity: A Comparison of Experimental Variability With (Q)SAR/Read-Across Predictions Helma, Christoph Vorgrimmler, David Gebele, Denis Gütlein, Martin Engeli, Barbara Zarn, Jürg Schilter, Benoit Lo Piparo, Elena Front Pharmacol Pharmacology This study compares the accuracy of (Q)SAR/read-across predictions with the experimental variability of chronic lowest-observed-adverse-effect levels (LOAELs) from in vivo experiments. We could demonstrate that predictions of the lazy structure-activity relationships (lazar) algorithm within the applicability domain of the training data have the same variability as the experimental training data. Predictions with a lower similarity threshold (i.e., a larger distance from the applicability domain) are also significantly better than random guessing, but the errors to be expected are higher and a manual inspection of prediction results is highly recommended. Frontiers Media S.A. 2018-04-25 /pmc/articles/PMC5996880/ /pubmed/29922154 http://dx.doi.org/10.3389/fphar.2018.00413 Text en Copyright © 2018 Helma, Vorgrimmler, Gebele, Gütlein, Engeli, Zarn, Schilter and Lo Piparo. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Pharmacology
Helma, Christoph
Vorgrimmler, David
Gebele, Denis
Gütlein, Martin
Engeli, Barbara
Zarn, Jürg
Schilter, Benoit
Lo Piparo, Elena
Modeling Chronic Toxicity: A Comparison of Experimental Variability With (Q)SAR/Read-Across Predictions
title Modeling Chronic Toxicity: A Comparison of Experimental Variability With (Q)SAR/Read-Across Predictions
title_full Modeling Chronic Toxicity: A Comparison of Experimental Variability With (Q)SAR/Read-Across Predictions
title_fullStr Modeling Chronic Toxicity: A Comparison of Experimental Variability With (Q)SAR/Read-Across Predictions
title_full_unstemmed Modeling Chronic Toxicity: A Comparison of Experimental Variability With (Q)SAR/Read-Across Predictions
title_short Modeling Chronic Toxicity: A Comparison of Experimental Variability With (Q)SAR/Read-Across Predictions
title_sort modeling chronic toxicity: a comparison of experimental variability with (q)sar/read-across predictions
topic Pharmacology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5996880/
https://www.ncbi.nlm.nih.gov/pubmed/29922154
http://dx.doi.org/10.3389/fphar.2018.00413
work_keys_str_mv AT helmachristoph modelingchronictoxicityacomparisonofexperimentalvariabilitywithqsarreadacrosspredictions
AT vorgrimmlerdavid modelingchronictoxicityacomparisonofexperimentalvariabilitywithqsarreadacrosspredictions
AT gebeledenis modelingchronictoxicityacomparisonofexperimentalvariabilitywithqsarreadacrosspredictions
AT gutleinmartin modelingchronictoxicityacomparisonofexperimentalvariabilitywithqsarreadacrosspredictions
AT engelibarbara modelingchronictoxicityacomparisonofexperimentalvariabilitywithqsarreadacrosspredictions
AT zarnjurg modelingchronictoxicityacomparisonofexperimentalvariabilitywithqsarreadacrosspredictions
AT schilterbenoit modelingchronictoxicityacomparisonofexperimentalvariabilitywithqsarreadacrosspredictions
AT lopiparoelena modelingchronictoxicityacomparisonofexperimentalvariabilitywithqsarreadacrosspredictions