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Modeling Chronic Toxicity: A Comparison of Experimental Variability With (Q)SAR/Read-Across Predictions
This study compares the accuracy of (Q)SAR/read-across predictions with the experimental variability of chronic lowest-observed-adverse-effect levels (LOAELs) from in vivo experiments. We could demonstrate that predictions of the lazy structure-activity relationships (lazar) algorithm within the app...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5996880/ https://www.ncbi.nlm.nih.gov/pubmed/29922154 http://dx.doi.org/10.3389/fphar.2018.00413 |
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author | Helma, Christoph Vorgrimmler, David Gebele, Denis Gütlein, Martin Engeli, Barbara Zarn, Jürg Schilter, Benoit Lo Piparo, Elena |
author_facet | Helma, Christoph Vorgrimmler, David Gebele, Denis Gütlein, Martin Engeli, Barbara Zarn, Jürg Schilter, Benoit Lo Piparo, Elena |
author_sort | Helma, Christoph |
collection | PubMed |
description | This study compares the accuracy of (Q)SAR/read-across predictions with the experimental variability of chronic lowest-observed-adverse-effect levels (LOAELs) from in vivo experiments. We could demonstrate that predictions of the lazy structure-activity relationships (lazar) algorithm within the applicability domain of the training data have the same variability as the experimental training data. Predictions with a lower similarity threshold (i.e., a larger distance from the applicability domain) are also significantly better than random guessing, but the errors to be expected are higher and a manual inspection of prediction results is highly recommended. |
format | Online Article Text |
id | pubmed-5996880 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-59968802018-06-19 Modeling Chronic Toxicity: A Comparison of Experimental Variability With (Q)SAR/Read-Across Predictions Helma, Christoph Vorgrimmler, David Gebele, Denis Gütlein, Martin Engeli, Barbara Zarn, Jürg Schilter, Benoit Lo Piparo, Elena Front Pharmacol Pharmacology This study compares the accuracy of (Q)SAR/read-across predictions with the experimental variability of chronic lowest-observed-adverse-effect levels (LOAELs) from in vivo experiments. We could demonstrate that predictions of the lazy structure-activity relationships (lazar) algorithm within the applicability domain of the training data have the same variability as the experimental training data. Predictions with a lower similarity threshold (i.e., a larger distance from the applicability domain) are also significantly better than random guessing, but the errors to be expected are higher and a manual inspection of prediction results is highly recommended. Frontiers Media S.A. 2018-04-25 /pmc/articles/PMC5996880/ /pubmed/29922154 http://dx.doi.org/10.3389/fphar.2018.00413 Text en Copyright © 2018 Helma, Vorgrimmler, Gebele, Gütlein, Engeli, Zarn, Schilter and Lo Piparo. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Pharmacology Helma, Christoph Vorgrimmler, David Gebele, Denis Gütlein, Martin Engeli, Barbara Zarn, Jürg Schilter, Benoit Lo Piparo, Elena Modeling Chronic Toxicity: A Comparison of Experimental Variability With (Q)SAR/Read-Across Predictions |
title | Modeling Chronic Toxicity: A Comparison of Experimental Variability With (Q)SAR/Read-Across Predictions |
title_full | Modeling Chronic Toxicity: A Comparison of Experimental Variability With (Q)SAR/Read-Across Predictions |
title_fullStr | Modeling Chronic Toxicity: A Comparison of Experimental Variability With (Q)SAR/Read-Across Predictions |
title_full_unstemmed | Modeling Chronic Toxicity: A Comparison of Experimental Variability With (Q)SAR/Read-Across Predictions |
title_short | Modeling Chronic Toxicity: A Comparison of Experimental Variability With (Q)SAR/Read-Across Predictions |
title_sort | modeling chronic toxicity: a comparison of experimental variability with (q)sar/read-across predictions |
topic | Pharmacology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5996880/ https://www.ncbi.nlm.nih.gov/pubmed/29922154 http://dx.doi.org/10.3389/fphar.2018.00413 |
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