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Applying machine learning techniques to predict the properties of energetic materials
We present a proof of concept that machine learning techniques can be used to predict the properties of CNOHF energetic molecules from their molecular structures. We focus on a small but diverse dataset consisting of 109 molecular structures spread across ten compound classes. Up until now, candidat...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5998124/ https://www.ncbi.nlm.nih.gov/pubmed/29899464 http://dx.doi.org/10.1038/s41598-018-27344-x |
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author | Elton, Daniel C. Boukouvalas, Zois Butrico, Mark S. Fuge, Mark D. Chung, Peter W. |
author_facet | Elton, Daniel C. Boukouvalas, Zois Butrico, Mark S. Fuge, Mark D. Chung, Peter W. |
author_sort | Elton, Daniel C. |
collection | PubMed |
description | We present a proof of concept that machine learning techniques can be used to predict the properties of CNOHF energetic molecules from their molecular structures. We focus on a small but diverse dataset consisting of 109 molecular structures spread across ten compound classes. Up until now, candidate molecules for energetic materials have been screened using predictions from expensive quantum simulations and thermochemical codes. We present a comprehensive comparison of machine learning models and several molecular featurization methods - sum over bonds, custom descriptors, Coulomb matrices, Bag of Bonds, and fingerprints. The best featurization was sum over bonds (bond counting), and the best model was kernel ridge regression. Despite having a small data set, we obtain acceptable errors and Pearson correlations for the prediction of detonation pressure, detonation velocity, explosive energy, heat of formation, density, and other properties out of sample. By including another dataset with ≈300 additional molecules in our training we show how the error can be pushed lower, although the convergence with number of molecules is slow. Our work paves the way for future applications of machine learning in this domain, including automated lead generation and interpreting machine learning models to obtain novel chemical insights. |
format | Online Article Text |
id | pubmed-5998124 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-59981242018-06-21 Applying machine learning techniques to predict the properties of energetic materials Elton, Daniel C. Boukouvalas, Zois Butrico, Mark S. Fuge, Mark D. Chung, Peter W. Sci Rep Article We present a proof of concept that machine learning techniques can be used to predict the properties of CNOHF energetic molecules from their molecular structures. We focus on a small but diverse dataset consisting of 109 molecular structures spread across ten compound classes. Up until now, candidate molecules for energetic materials have been screened using predictions from expensive quantum simulations and thermochemical codes. We present a comprehensive comparison of machine learning models and several molecular featurization methods - sum over bonds, custom descriptors, Coulomb matrices, Bag of Bonds, and fingerprints. The best featurization was sum over bonds (bond counting), and the best model was kernel ridge regression. Despite having a small data set, we obtain acceptable errors and Pearson correlations for the prediction of detonation pressure, detonation velocity, explosive energy, heat of formation, density, and other properties out of sample. By including another dataset with ≈300 additional molecules in our training we show how the error can be pushed lower, although the convergence with number of molecules is slow. Our work paves the way for future applications of machine learning in this domain, including automated lead generation and interpreting machine learning models to obtain novel chemical insights. Nature Publishing Group UK 2018-06-13 /pmc/articles/PMC5998124/ /pubmed/29899464 http://dx.doi.org/10.1038/s41598-018-27344-x Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Elton, Daniel C. Boukouvalas, Zois Butrico, Mark S. Fuge, Mark D. Chung, Peter W. Applying machine learning techniques to predict the properties of energetic materials |
title | Applying machine learning techniques to predict the properties of energetic materials |
title_full | Applying machine learning techniques to predict the properties of energetic materials |
title_fullStr | Applying machine learning techniques to predict the properties of energetic materials |
title_full_unstemmed | Applying machine learning techniques to predict the properties of energetic materials |
title_short | Applying machine learning techniques to predict the properties of energetic materials |
title_sort | applying machine learning techniques to predict the properties of energetic materials |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5998124/ https://www.ncbi.nlm.nih.gov/pubmed/29899464 http://dx.doi.org/10.1038/s41598-018-27344-x |
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