Genome-scale DNA sequence data and the evolutionary history of placental mammals

We present a genomic data set comprised of the coding DNA sequences of 5162 loci from 90 vertebrate species, including 82 mammals. The loci were aligned with their protein sequences. The aligned protein sequences were then back translated into their original DNA sequences. The alignments were furthe...

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Detalles Bibliográficos
Autores principales: Wu, Shaoyuan, Edwards, Scott, Liu, Liang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Molecular Phylogenetics and Evolution   
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5998303/
https://www.ncbi.nlm.nih.gov/pubmed/29904704
http://dx.doi.org/10.1016/j.dib.2018.04.094
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author Wu, Shaoyuan
Edwards, Scott
Liu, Liang
author_facet Wu, Shaoyuan
Edwards, Scott
Liu, Liang
author_sort Wu, Shaoyuan
collection PubMed
description We present a genomic data set comprised of the coding DNA sequences of 5162 loci from 90 vertebrate species, including 82 mammals. The loci were aligned with their protein sequences. The aligned protein sequences were then back translated into their original DNA sequences. The alignments were further filtered to remove individual sequences from each alignment exhibiting long branches or other unusual features. The data is deposited in figshare (http://figshare.com/articles/cds_5162.zip/6031190) and will be useful as a test data set for large-scale phylogenomic analysis.
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spelling pubmed-59983032018-06-14 Genome-scale DNA sequence data and the evolutionary history of placental mammals Wu, Shaoyuan Edwards, Scott Liu, Liang Data Brief Molecular Phylogenetics and Evolution    We present a genomic data set comprised of the coding DNA sequences of 5162 loci from 90 vertebrate species, including 82 mammals. The loci were aligned with their protein sequences. The aligned protein sequences were then back translated into their original DNA sequences. The alignments were further filtered to remove individual sequences from each alignment exhibiting long branches or other unusual features. The data is deposited in figshare (http://figshare.com/articles/cds_5162.zip/6031190) and will be useful as a test data set for large-scale phylogenomic analysis. Elsevier 2018-05-01 /pmc/articles/PMC5998303/ /pubmed/29904704 http://dx.doi.org/10.1016/j.dib.2018.04.094 Text en http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Molecular Phylogenetics and Evolution   
Wu, Shaoyuan
Edwards, Scott
Liu, Liang
Genome-scale DNA sequence data and the evolutionary history of placental mammals
title Genome-scale DNA sequence data and the evolutionary history of placental mammals
title_full Genome-scale DNA sequence data and the evolutionary history of placental mammals
title_fullStr Genome-scale DNA sequence data and the evolutionary history of placental mammals
title_full_unstemmed Genome-scale DNA sequence data and the evolutionary history of placental mammals
title_short Genome-scale DNA sequence data and the evolutionary history of placental mammals
title_sort genome-scale dna sequence data and the evolutionary history of placental mammals
topic Molecular Phylogenetics and Evolution   
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5998303/
https://www.ncbi.nlm.nih.gov/pubmed/29904704
http://dx.doi.org/10.1016/j.dib.2018.04.094
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