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Fixation probability of a beneficial mutation conferring decreased generation time in changing environments
BACKGROUND: One central building block of population genetics is the fixation probability. It is a probabilistic understanding of the eventual fate of new mutations. Moreover, the fixation probability of new beneficial mutations plays an important effect on the adaptation of populations to environme...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5998907/ https://www.ncbi.nlm.nih.gov/pubmed/29745841 http://dx.doi.org/10.1186/s12918-018-0575-9 |
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author | Cui, Fangshu Yuan, Bo |
author_facet | Cui, Fangshu Yuan, Bo |
author_sort | Cui, Fangshu |
collection | PubMed |
description | BACKGROUND: One central building block of population genetics is the fixation probability. It is a probabilistic understanding of the eventual fate of new mutations. Moreover, the fixation probability of new beneficial mutations plays an important effect on the adaptation of populations to environmental challenges. Great progress has been made in the study of the beneficial mutations that increases offspring number. However, the fixation probability of beneficial mutations with a shorter generation time under various genetic and ecological conditions has not been explored. RESULTS: Here we extend the classical result of the fixation probability of beneficial mutations obtained by Haldane, and estimate the fixation probability of a beneficial mutation with a reduced generation time in a changing environment. Assuming that the selective advantage is very small, we concentrate all the changing factors of environment on a single quantity: effective selective advantage. Using a time-dependent branching process, we get the analytic approximation for the fixation probability of beneficial mutations that decrease the generation time. Then, we apply this approximation to four interesting biological cases. CONCLUSIONS: In these instances, we show the comparison of the approximation with the accurate values. We find that they are consistent, demonstrating the effectiveness of our result for the fixation probability of beneficial mutations conferring a reduced replication time. |
format | Online Article Text |
id | pubmed-5998907 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-59989072018-06-25 Fixation probability of a beneficial mutation conferring decreased generation time in changing environments Cui, Fangshu Yuan, Bo BMC Syst Biol Research BACKGROUND: One central building block of population genetics is the fixation probability. It is a probabilistic understanding of the eventual fate of new mutations. Moreover, the fixation probability of new beneficial mutations plays an important effect on the adaptation of populations to environmental challenges. Great progress has been made in the study of the beneficial mutations that increases offspring number. However, the fixation probability of beneficial mutations with a shorter generation time under various genetic and ecological conditions has not been explored. RESULTS: Here we extend the classical result of the fixation probability of beneficial mutations obtained by Haldane, and estimate the fixation probability of a beneficial mutation with a reduced generation time in a changing environment. Assuming that the selective advantage is very small, we concentrate all the changing factors of environment on a single quantity: effective selective advantage. Using a time-dependent branching process, we get the analytic approximation for the fixation probability of beneficial mutations that decrease the generation time. Then, we apply this approximation to four interesting biological cases. CONCLUSIONS: In these instances, we show the comparison of the approximation with the accurate values. We find that they are consistent, demonstrating the effectiveness of our result for the fixation probability of beneficial mutations conferring a reduced replication time. BioMed Central 2018-04-24 /pmc/articles/PMC5998907/ /pubmed/29745841 http://dx.doi.org/10.1186/s12918-018-0575-9 Text en © The Author(s). 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Cui, Fangshu Yuan, Bo Fixation probability of a beneficial mutation conferring decreased generation time in changing environments |
title | Fixation probability of a beneficial mutation conferring decreased generation time in changing environments |
title_full | Fixation probability of a beneficial mutation conferring decreased generation time in changing environments |
title_fullStr | Fixation probability of a beneficial mutation conferring decreased generation time in changing environments |
title_full_unstemmed | Fixation probability of a beneficial mutation conferring decreased generation time in changing environments |
title_short | Fixation probability of a beneficial mutation conferring decreased generation time in changing environments |
title_sort | fixation probability of a beneficial mutation conferring decreased generation time in changing environments |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5998907/ https://www.ncbi.nlm.nih.gov/pubmed/29745841 http://dx.doi.org/10.1186/s12918-018-0575-9 |
work_keys_str_mv | AT cuifangshu fixationprobabilityofabeneficialmutationconferringdecreasedgenerationtimeinchangingenvironments AT yuanbo fixationprobabilityofabeneficialmutationconferringdecreasedgenerationtimeinchangingenvironments |