Genomic characterization of grapevine virus J, a novel virus identified in grapevine

This paper describes the nucleotide sequence and genome organization of a novel RNA virus detected in grapevine (Vitis vinifera) cultivar ‘Kizil Sapak’ by high-throughput sequencing (HTS) and tentatively named “grapevine virus J” (GVJ). The full genome of GVJ is 7,390 nucleotides in length, which co...

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Detalles Bibliográficos
Autores principales: Diaz-Lara, Alfredo, Golino, Deborah, Al Rwahnih, Maher
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Vienna 2018
Materias:
Annotated Sequence Record
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5999178/
https://www.ncbi.nlm.nih.gov/pubmed/29516247
http://dx.doi.org/10.1007/s00705-018-3793-y
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author Diaz-Lara, Alfredo
Golino, Deborah
Al Rwahnih, Maher
author_facet Diaz-Lara, Alfredo
Golino, Deborah
Al Rwahnih, Maher
author_sort Diaz-Lara, Alfredo
collection PubMed
description This paper describes the nucleotide sequence and genome organization of a novel RNA virus detected in grapevine (Vitis vinifera) cultivar ‘Kizil Sapak’ by high-throughput sequencing (HTS) and tentatively named “grapevine virus J” (GVJ). The full genome of GVJ is 7,390 nucleotides in length, which comprises five open reading frames (ORFs), including a 20K ORF (ORF 2) between the replicase (ORF 1) and the movement protein (ORF 3) genes. According to the level of sequence homology and phylogenetics, GVJ is proposed as a new member of the genus Vitivirus (subfamily Trivirinae; family Betaflexiviridae), with the closest characterized virus being grapevine virus D (GVD).
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spelling pubmed-59991782018-06-28 Genomic characterization of grapevine virus J, a novel virus identified in grapevine Diaz-Lara, Alfredo Golino, Deborah Al Rwahnih, Maher Arch Virol Annotated Sequence Record This paper describes the nucleotide sequence and genome organization of a novel RNA virus detected in grapevine (Vitis vinifera) cultivar ‘Kizil Sapak’ by high-throughput sequencing (HTS) and tentatively named “grapevine virus J” (GVJ). The full genome of GVJ is 7,390 nucleotides in length, which comprises five open reading frames (ORFs), including a 20K ORF (ORF 2) between the replicase (ORF 1) and the movement protein (ORF 3) genes. According to the level of sequence homology and phylogenetics, GVJ is proposed as a new member of the genus Vitivirus (subfamily Trivirinae; family Betaflexiviridae), with the closest characterized virus being grapevine virus D (GVD). Springer Vienna 2018-03-07 2018 /pmc/articles/PMC5999178/ /pubmed/29516247 http://dx.doi.org/10.1007/s00705-018-3793-y Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Annotated Sequence Record
Diaz-Lara, Alfredo
Golino, Deborah
Al Rwahnih, Maher
Genomic characterization of grapevine virus J, a novel virus identified in grapevine
title Genomic characterization of grapevine virus J, a novel virus identified in grapevine
title_full Genomic characterization of grapevine virus J, a novel virus identified in grapevine
title_fullStr Genomic characterization of grapevine virus J, a novel virus identified in grapevine
title_full_unstemmed Genomic characterization of grapevine virus J, a novel virus identified in grapevine
title_short Genomic characterization of grapevine virus J, a novel virus identified in grapevine
title_sort genomic characterization of grapevine virus j, a novel virus identified in grapevine
topic Annotated Sequence Record
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5999178/
https://www.ncbi.nlm.nih.gov/pubmed/29516247
http://dx.doi.org/10.1007/s00705-018-3793-y
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