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Degradation rate uniformity determines success of oscillations in repressive feedback regulatory networks
Ring oscillators are biochemical circuits consisting of a ring of interactions capable of sustained oscillations. The nonlinear interactions between genes hinder the analytical insight into their function, usually requiring computational exploration. Here, we show that, despite the apparent complexi...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6000169/ https://www.ncbi.nlm.nih.gov/pubmed/29743273 http://dx.doi.org/10.1098/rsif.2018.0157 |
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author | Page, Karen M. Perez-Carrasco, Ruben |
author_facet | Page, Karen M. Perez-Carrasco, Ruben |
author_sort | Page, Karen M. |
collection | PubMed |
description | Ring oscillators are biochemical circuits consisting of a ring of interactions capable of sustained oscillations. The nonlinear interactions between genes hinder the analytical insight into their function, usually requiring computational exploration. Here, we show that, despite the apparent complexity, the stability of the unique steady state in an incoherent feedback ring depends only on the degradation rates and a single parameter summarizing the feedback of the circuit. Concretely, we show that the range of regulatory parameters that yield oscillatory behaviour is maximized when the degradation rates are equal. Strikingly, this result holds independently of the regulatory functions used or number of genes. We also derive properties of the oscillations as a function of the degradation rates and number of nodes forming the ring. Finally, we explore the role of mRNA dynamics by applying the generic results to the specific case with two naturally different degradation timescales. |
format | Online Article Text |
id | pubmed-6000169 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-60001692018-06-14 Degradation rate uniformity determines success of oscillations in repressive feedback regulatory networks Page, Karen M. Perez-Carrasco, Ruben J R Soc Interface Life Sciences–Mathematics interface Ring oscillators are biochemical circuits consisting of a ring of interactions capable of sustained oscillations. The nonlinear interactions between genes hinder the analytical insight into their function, usually requiring computational exploration. Here, we show that, despite the apparent complexity, the stability of the unique steady state in an incoherent feedback ring depends only on the degradation rates and a single parameter summarizing the feedback of the circuit. Concretely, we show that the range of regulatory parameters that yield oscillatory behaviour is maximized when the degradation rates are equal. Strikingly, this result holds independently of the regulatory functions used or number of genes. We also derive properties of the oscillations as a function of the degradation rates and number of nodes forming the ring. Finally, we explore the role of mRNA dynamics by applying the generic results to the specific case with two naturally different degradation timescales. The Royal Society 2018-05 2018-05-09 /pmc/articles/PMC6000169/ /pubmed/29743273 http://dx.doi.org/10.1098/rsif.2018.0157 Text en © 2018 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Life Sciences–Mathematics interface Page, Karen M. Perez-Carrasco, Ruben Degradation rate uniformity determines success of oscillations in repressive feedback regulatory networks |
title | Degradation rate uniformity determines success of oscillations in repressive feedback regulatory networks |
title_full | Degradation rate uniformity determines success of oscillations in repressive feedback regulatory networks |
title_fullStr | Degradation rate uniformity determines success of oscillations in repressive feedback regulatory networks |
title_full_unstemmed | Degradation rate uniformity determines success of oscillations in repressive feedback regulatory networks |
title_short | Degradation rate uniformity determines success of oscillations in repressive feedback regulatory networks |
title_sort | degradation rate uniformity determines success of oscillations in repressive feedback regulatory networks |
topic | Life Sciences–Mathematics interface |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6000169/ https://www.ncbi.nlm.nih.gov/pubmed/29743273 http://dx.doi.org/10.1098/rsif.2018.0157 |
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