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Degradation rate uniformity determines success of oscillations in repressive feedback regulatory networks

Ring oscillators are biochemical circuits consisting of a ring of interactions capable of sustained oscillations. The nonlinear interactions between genes hinder the analytical insight into their function, usually requiring computational exploration. Here, we show that, despite the apparent complexi...

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Detalles Bibliográficos
Autores principales: Page, Karen M., Perez-Carrasco, Ruben
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6000169/
https://www.ncbi.nlm.nih.gov/pubmed/29743273
http://dx.doi.org/10.1098/rsif.2018.0157
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author Page, Karen M.
Perez-Carrasco, Ruben
author_facet Page, Karen M.
Perez-Carrasco, Ruben
author_sort Page, Karen M.
collection PubMed
description Ring oscillators are biochemical circuits consisting of a ring of interactions capable of sustained oscillations. The nonlinear interactions between genes hinder the analytical insight into their function, usually requiring computational exploration. Here, we show that, despite the apparent complexity, the stability of the unique steady state in an incoherent feedback ring depends only on the degradation rates and a single parameter summarizing the feedback of the circuit. Concretely, we show that the range of regulatory parameters that yield oscillatory behaviour is maximized when the degradation rates are equal. Strikingly, this result holds independently of the regulatory functions used or number of genes. We also derive properties of the oscillations as a function of the degradation rates and number of nodes forming the ring. Finally, we explore the role of mRNA dynamics by applying the generic results to the specific case with two naturally different degradation timescales.
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spelling pubmed-60001692018-06-14 Degradation rate uniformity determines success of oscillations in repressive feedback regulatory networks Page, Karen M. Perez-Carrasco, Ruben J R Soc Interface Life Sciences–Mathematics interface Ring oscillators are biochemical circuits consisting of a ring of interactions capable of sustained oscillations. The nonlinear interactions between genes hinder the analytical insight into their function, usually requiring computational exploration. Here, we show that, despite the apparent complexity, the stability of the unique steady state in an incoherent feedback ring depends only on the degradation rates and a single parameter summarizing the feedback of the circuit. Concretely, we show that the range of regulatory parameters that yield oscillatory behaviour is maximized when the degradation rates are equal. Strikingly, this result holds independently of the regulatory functions used or number of genes. We also derive properties of the oscillations as a function of the degradation rates and number of nodes forming the ring. Finally, we explore the role of mRNA dynamics by applying the generic results to the specific case with two naturally different degradation timescales. The Royal Society 2018-05 2018-05-09 /pmc/articles/PMC6000169/ /pubmed/29743273 http://dx.doi.org/10.1098/rsif.2018.0157 Text en © 2018 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.
spellingShingle Life Sciences–Mathematics interface
Page, Karen M.
Perez-Carrasco, Ruben
Degradation rate uniformity determines success of oscillations in repressive feedback regulatory networks
title Degradation rate uniformity determines success of oscillations in repressive feedback regulatory networks
title_full Degradation rate uniformity determines success of oscillations in repressive feedback regulatory networks
title_fullStr Degradation rate uniformity determines success of oscillations in repressive feedback regulatory networks
title_full_unstemmed Degradation rate uniformity determines success of oscillations in repressive feedback regulatory networks
title_short Degradation rate uniformity determines success of oscillations in repressive feedback regulatory networks
title_sort degradation rate uniformity determines success of oscillations in repressive feedback regulatory networks
topic Life Sciences–Mathematics interface
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6000169/
https://www.ncbi.nlm.nih.gov/pubmed/29743273
http://dx.doi.org/10.1098/rsif.2018.0157
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