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Time-varying and state-dependent recovery rates in epidemiological models

Differential equation models of infectious disease have undergone many theoretical extensions that are invaluable for the evaluation of disease spread. For instance, while one traditionally uses a bilinear term to describe the incidence rate of infection, physically more realistic generalizations ex...

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Autores principales: Greenhalgh, Scott, Day, Troy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: KeAi Publishing 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6001973/
https://www.ncbi.nlm.nih.gov/pubmed/30137720
http://dx.doi.org/10.1016/j.idm.2017.09.002
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author Greenhalgh, Scott
Day, Troy
author_facet Greenhalgh, Scott
Day, Troy
author_sort Greenhalgh, Scott
collection PubMed
description Differential equation models of infectious disease have undergone many theoretical extensions that are invaluable for the evaluation of disease spread. For instance, while one traditionally uses a bilinear term to describe the incidence rate of infection, physically more realistic generalizations exist to account for effects such as the saturation of infection. However, such theoretical extensions of recovery rates in differential equation models have only started to be developed. This is despite the fact that a constant rate often does not provide a good description of the dynamics of recovery and that the recovery rate is arguably as important as the incidence rate in governing the dynamics of a system. We provide a first-principles derivation of state-dependent and time-varying recovery rates in differential equation models of infectious disease. Through this derivation, we demonstrate how to obtain time-varying and state-dependent recovery rates based on the family of Pearson distributions and a power-law distribution, respectively. For recovery rates based on the family of Pearson distributions, we show that uncertainty in skewness, in comparison to other statistical moments, is at least two times more impactful on the sensitivity of predicting an epidemic's peak. In addition, using recovery rates based on a power-law distribution, we provide a procedure to obtain state-dependent recovery rates. For such state-dependent rates, we derive a natural connection between recovery rate parameters with the mean and standard deviation of a power-law distribution, illustrating the impact that standard deviation has on the shape of an epidemic wave.
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spelling pubmed-60019732018-06-20 Time-varying and state-dependent recovery rates in epidemiological models Greenhalgh, Scott Day, Troy Infect Dis Model Article Differential equation models of infectious disease have undergone many theoretical extensions that are invaluable for the evaluation of disease spread. For instance, while one traditionally uses a bilinear term to describe the incidence rate of infection, physically more realistic generalizations exist to account for effects such as the saturation of infection. However, such theoretical extensions of recovery rates in differential equation models have only started to be developed. This is despite the fact that a constant rate often does not provide a good description of the dynamics of recovery and that the recovery rate is arguably as important as the incidence rate in governing the dynamics of a system. We provide a first-principles derivation of state-dependent and time-varying recovery rates in differential equation models of infectious disease. Through this derivation, we demonstrate how to obtain time-varying and state-dependent recovery rates based on the family of Pearson distributions and a power-law distribution, respectively. For recovery rates based on the family of Pearson distributions, we show that uncertainty in skewness, in comparison to other statistical moments, is at least two times more impactful on the sensitivity of predicting an epidemic's peak. In addition, using recovery rates based on a power-law distribution, we provide a procedure to obtain state-dependent recovery rates. For such state-dependent rates, we derive a natural connection between recovery rate parameters with the mean and standard deviation of a power-law distribution, illustrating the impact that standard deviation has on the shape of an epidemic wave. KeAi Publishing 2017-10-14 /pmc/articles/PMC6001973/ /pubmed/30137720 http://dx.doi.org/10.1016/j.idm.2017.09.002 Text en © 2017 The Authors. Production and hosting by Elsevier B.V. on behalf of KeAi Communications Co., Ltd. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Greenhalgh, Scott
Day, Troy
Time-varying and state-dependent recovery rates in epidemiological models
title Time-varying and state-dependent recovery rates in epidemiological models
title_full Time-varying and state-dependent recovery rates in epidemiological models
title_fullStr Time-varying and state-dependent recovery rates in epidemiological models
title_full_unstemmed Time-varying and state-dependent recovery rates in epidemiological models
title_short Time-varying and state-dependent recovery rates in epidemiological models
title_sort time-varying and state-dependent recovery rates in epidemiological models
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6001973/
https://www.ncbi.nlm.nih.gov/pubmed/30137720
http://dx.doi.org/10.1016/j.idm.2017.09.002
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