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A rapid multiplex PCR assay for presumptive species identification of rhinoceros horns and its implementation in Vietnam
Rhinoceros (rhinos) have suffered a dramatic increase in poaching over the past decade due to the growing demand for rhino horn products in Asia. One way to reverse this trend is to enhance enforcement and intelligence gathering tools used for species identification of horns, in particular making th...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6002117/ https://www.ncbi.nlm.nih.gov/pubmed/29902212 http://dx.doi.org/10.1371/journal.pone.0198565 |
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author | Ewart, Kyle M. Frankham, Greta J. McEwing, Ross The, Dang Tat Hogg, Carolyn J. Wade, Claire Lo, Nathan Johnson, Rebecca N. |
author_facet | Ewart, Kyle M. Frankham, Greta J. McEwing, Ross The, Dang Tat Hogg, Carolyn J. Wade, Claire Lo, Nathan Johnson, Rebecca N. |
author_sort | Ewart, Kyle M. |
collection | PubMed |
description | Rhinoceros (rhinos) have suffered a dramatic increase in poaching over the past decade due to the growing demand for rhino horn products in Asia. One way to reverse this trend is to enhance enforcement and intelligence gathering tools used for species identification of horns, in particular making them fast, inexpensive and accurate. Traditionally, species identification tests are based on DNA sequence data, which, depending on laboratory resources, can be either time or cost prohibitive. This study presents a rapid rhino species identification test, utilizing species-specific primers within the cytochrome b gene multiplexed in a single reaction, with a presumptive species identification based on the length of the resultant amplicon. This multiplex PCR assay can provide a presumptive species identification result in less than 24 hours. Sequence-based definitive testing can be conducted if/when required (e.g. court purposes). This work also presents an actual casework scenario in which the presumptive test was successfully utlitised, in concert with sequence-based definitive testing. The test was carried out on seized suspected rhino horns tested at the Institute of Ecology and Biological Resources, the CITES mandated laboratory in Vietnam, a country that is known to be a major source of demand for rhino horns. This test represents the basis for which future ‘rapid species identification tests’ can be trialed. |
format | Online Article Text |
id | pubmed-6002117 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-60021172018-06-25 A rapid multiplex PCR assay for presumptive species identification of rhinoceros horns and its implementation in Vietnam Ewart, Kyle M. Frankham, Greta J. McEwing, Ross The, Dang Tat Hogg, Carolyn J. Wade, Claire Lo, Nathan Johnson, Rebecca N. PLoS One Research Article Rhinoceros (rhinos) have suffered a dramatic increase in poaching over the past decade due to the growing demand for rhino horn products in Asia. One way to reverse this trend is to enhance enforcement and intelligence gathering tools used for species identification of horns, in particular making them fast, inexpensive and accurate. Traditionally, species identification tests are based on DNA sequence data, which, depending on laboratory resources, can be either time or cost prohibitive. This study presents a rapid rhino species identification test, utilizing species-specific primers within the cytochrome b gene multiplexed in a single reaction, with a presumptive species identification based on the length of the resultant amplicon. This multiplex PCR assay can provide a presumptive species identification result in less than 24 hours. Sequence-based definitive testing can be conducted if/when required (e.g. court purposes). This work also presents an actual casework scenario in which the presumptive test was successfully utlitised, in concert with sequence-based definitive testing. The test was carried out on seized suspected rhino horns tested at the Institute of Ecology and Biological Resources, the CITES mandated laboratory in Vietnam, a country that is known to be a major source of demand for rhino horns. This test represents the basis for which future ‘rapid species identification tests’ can be trialed. Public Library of Science 2018-06-14 /pmc/articles/PMC6002117/ /pubmed/29902212 http://dx.doi.org/10.1371/journal.pone.0198565 Text en © 2018 Ewart et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Ewart, Kyle M. Frankham, Greta J. McEwing, Ross The, Dang Tat Hogg, Carolyn J. Wade, Claire Lo, Nathan Johnson, Rebecca N. A rapid multiplex PCR assay for presumptive species identification of rhinoceros horns and its implementation in Vietnam |
title | A rapid multiplex PCR assay for presumptive species identification of rhinoceros horns and its implementation in Vietnam |
title_full | A rapid multiplex PCR assay for presumptive species identification of rhinoceros horns and its implementation in Vietnam |
title_fullStr | A rapid multiplex PCR assay for presumptive species identification of rhinoceros horns and its implementation in Vietnam |
title_full_unstemmed | A rapid multiplex PCR assay for presumptive species identification of rhinoceros horns and its implementation in Vietnam |
title_short | A rapid multiplex PCR assay for presumptive species identification of rhinoceros horns and its implementation in Vietnam |
title_sort | rapid multiplex pcr assay for presumptive species identification of rhinoceros horns and its implementation in vietnam |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6002117/ https://www.ncbi.nlm.nih.gov/pubmed/29902212 http://dx.doi.org/10.1371/journal.pone.0198565 |
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