Cargando…

A rapid multiplex PCR assay for presumptive species identification of rhinoceros horns and its implementation in Vietnam

Rhinoceros (rhinos) have suffered a dramatic increase in poaching over the past decade due to the growing demand for rhino horn products in Asia. One way to reverse this trend is to enhance enforcement and intelligence gathering tools used for species identification of horns, in particular making th...

Descripción completa

Detalles Bibliográficos
Autores principales: Ewart, Kyle M., Frankham, Greta J., McEwing, Ross, The, Dang Tat, Hogg, Carolyn J., Wade, Claire, Lo, Nathan, Johnson, Rebecca N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6002117/
https://www.ncbi.nlm.nih.gov/pubmed/29902212
http://dx.doi.org/10.1371/journal.pone.0198565
_version_ 1783332147933741056
author Ewart, Kyle M.
Frankham, Greta J.
McEwing, Ross
The, Dang Tat
Hogg, Carolyn J.
Wade, Claire
Lo, Nathan
Johnson, Rebecca N.
author_facet Ewart, Kyle M.
Frankham, Greta J.
McEwing, Ross
The, Dang Tat
Hogg, Carolyn J.
Wade, Claire
Lo, Nathan
Johnson, Rebecca N.
author_sort Ewart, Kyle M.
collection PubMed
description Rhinoceros (rhinos) have suffered a dramatic increase in poaching over the past decade due to the growing demand for rhino horn products in Asia. One way to reverse this trend is to enhance enforcement and intelligence gathering tools used for species identification of horns, in particular making them fast, inexpensive and accurate. Traditionally, species identification tests are based on DNA sequence data, which, depending on laboratory resources, can be either time or cost prohibitive. This study presents a rapid rhino species identification test, utilizing species-specific primers within the cytochrome b gene multiplexed in a single reaction, with a presumptive species identification based on the length of the resultant amplicon. This multiplex PCR assay can provide a presumptive species identification result in less than 24 hours. Sequence-based definitive testing can be conducted if/when required (e.g. court purposes). This work also presents an actual casework scenario in which the presumptive test was successfully utlitised, in concert with sequence-based definitive testing. The test was carried out on seized suspected rhino horns tested at the Institute of Ecology and Biological Resources, the CITES mandated laboratory in Vietnam, a country that is known to be a major source of demand for rhino horns. This test represents the basis for which future ‘rapid species identification tests’ can be trialed.
format Online
Article
Text
id pubmed-6002117
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-60021172018-06-25 A rapid multiplex PCR assay for presumptive species identification of rhinoceros horns and its implementation in Vietnam Ewart, Kyle M. Frankham, Greta J. McEwing, Ross The, Dang Tat Hogg, Carolyn J. Wade, Claire Lo, Nathan Johnson, Rebecca N. PLoS One Research Article Rhinoceros (rhinos) have suffered a dramatic increase in poaching over the past decade due to the growing demand for rhino horn products in Asia. One way to reverse this trend is to enhance enforcement and intelligence gathering tools used for species identification of horns, in particular making them fast, inexpensive and accurate. Traditionally, species identification tests are based on DNA sequence data, which, depending on laboratory resources, can be either time or cost prohibitive. This study presents a rapid rhino species identification test, utilizing species-specific primers within the cytochrome b gene multiplexed in a single reaction, with a presumptive species identification based on the length of the resultant amplicon. This multiplex PCR assay can provide a presumptive species identification result in less than 24 hours. Sequence-based definitive testing can be conducted if/when required (e.g. court purposes). This work also presents an actual casework scenario in which the presumptive test was successfully utlitised, in concert with sequence-based definitive testing. The test was carried out on seized suspected rhino horns tested at the Institute of Ecology and Biological Resources, the CITES mandated laboratory in Vietnam, a country that is known to be a major source of demand for rhino horns. This test represents the basis for which future ‘rapid species identification tests’ can be trialed. Public Library of Science 2018-06-14 /pmc/articles/PMC6002117/ /pubmed/29902212 http://dx.doi.org/10.1371/journal.pone.0198565 Text en © 2018 Ewart et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Ewart, Kyle M.
Frankham, Greta J.
McEwing, Ross
The, Dang Tat
Hogg, Carolyn J.
Wade, Claire
Lo, Nathan
Johnson, Rebecca N.
A rapid multiplex PCR assay for presumptive species identification of rhinoceros horns and its implementation in Vietnam
title A rapid multiplex PCR assay for presumptive species identification of rhinoceros horns and its implementation in Vietnam
title_full A rapid multiplex PCR assay for presumptive species identification of rhinoceros horns and its implementation in Vietnam
title_fullStr A rapid multiplex PCR assay for presumptive species identification of rhinoceros horns and its implementation in Vietnam
title_full_unstemmed A rapid multiplex PCR assay for presumptive species identification of rhinoceros horns and its implementation in Vietnam
title_short A rapid multiplex PCR assay for presumptive species identification of rhinoceros horns and its implementation in Vietnam
title_sort rapid multiplex pcr assay for presumptive species identification of rhinoceros horns and its implementation in vietnam
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6002117/
https://www.ncbi.nlm.nih.gov/pubmed/29902212
http://dx.doi.org/10.1371/journal.pone.0198565
work_keys_str_mv AT ewartkylem arapidmultiplexpcrassayforpresumptivespeciesidentificationofrhinoceroshornsanditsimplementationinvietnam
AT frankhamgretaj arapidmultiplexpcrassayforpresumptivespeciesidentificationofrhinoceroshornsanditsimplementationinvietnam
AT mcewingross arapidmultiplexpcrassayforpresumptivespeciesidentificationofrhinoceroshornsanditsimplementationinvietnam
AT thedangtat arapidmultiplexpcrassayforpresumptivespeciesidentificationofrhinoceroshornsanditsimplementationinvietnam
AT hoggcarolynj arapidmultiplexpcrassayforpresumptivespeciesidentificationofrhinoceroshornsanditsimplementationinvietnam
AT wadeclaire arapidmultiplexpcrassayforpresumptivespeciesidentificationofrhinoceroshornsanditsimplementationinvietnam
AT lonathan arapidmultiplexpcrassayforpresumptivespeciesidentificationofrhinoceroshornsanditsimplementationinvietnam
AT johnsonrebeccan arapidmultiplexpcrassayforpresumptivespeciesidentificationofrhinoceroshornsanditsimplementationinvietnam
AT ewartkylem rapidmultiplexpcrassayforpresumptivespeciesidentificationofrhinoceroshornsanditsimplementationinvietnam
AT frankhamgretaj rapidmultiplexpcrassayforpresumptivespeciesidentificationofrhinoceroshornsanditsimplementationinvietnam
AT mcewingross rapidmultiplexpcrassayforpresumptivespeciesidentificationofrhinoceroshornsanditsimplementationinvietnam
AT thedangtat rapidmultiplexpcrassayforpresumptivespeciesidentificationofrhinoceroshornsanditsimplementationinvietnam
AT hoggcarolynj rapidmultiplexpcrassayforpresumptivespeciesidentificationofrhinoceroshornsanditsimplementationinvietnam
AT wadeclaire rapidmultiplexpcrassayforpresumptivespeciesidentificationofrhinoceroshornsanditsimplementationinvietnam
AT lonathan rapidmultiplexpcrassayforpresumptivespeciesidentificationofrhinoceroshornsanditsimplementationinvietnam
AT johnsonrebeccan rapidmultiplexpcrassayforpresumptivespeciesidentificationofrhinoceroshornsanditsimplementationinvietnam